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Detailed information on CNT30609955


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-159

BLAST vs NONCODE:
NONGMAT000502, E-value = 5e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3032157Gossypium raimondiiTheobroma cacao75.0376.9285.71700forward

Expression of CNT30609955

Peptides detected in this lncRNA

>peptide 1 (30 aa)
TSKKNSLRRTENIGKYANSIQRETIHRCNR*

>peptide 2 (39 aa)
MPSLSWILAFTLSIVSELSTSSVIVLPVRVLTKICILFG*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSRVIVFPVSVFTKICIPPRKRRTRWRVDSFWML*

Sequence

>CNT30609955
TCACTTCCAAGAAAAATAGTTTACGAAGAACAGAGAATATAGGTAAATATGCAAATTCCATTCAAAGAGAAACCATACATAGATGCAACCGGTAAACAAA
GACTAGAAATTATTTAAAAGGCCACCAAAGGGCACAATCCTTCACGTAAAACCAGAAAACCCACATTAAGGAAGACCTTAAGGCTTAGAACCCACCACGA
AGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCT
GATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT
CTTGACGAAGATCTGCATCCCACCTCGAAGACGTAGAACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCGAGT
TGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCT
CGAGAGTGATCGTCTTTCCGGTAAGCGTTTTCACGAAGATTTGCATCCCACCGCGCAAACGGAGGACGAGGTGGAGAGTTGACTCCTTTTGGATGTTGTA
ATCGGCCAAGGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTCACG
TTGTCGATCGTGTCGGAGCTCTCGACCTCGAGTGTGATCGTCTTGCCGGTTAGAGTCTTAACGAAGATCTGCATCTTGTTTGGCTAAATAGAAAATCGAG
AAAGAAAACTTCAATATACAAAGCAAACAAATT