Detailed information on CNT30609809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 5e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676981Gossypium raimondiiSetaria viridis52.4735.5783.41223forward
CNT30616920Gossypium raimondiiSesamum indicum63.2927.5384.39269reverse complement
CNT30710098Gossypium raimondiiGlycine max41.4156.0587.5176reverse complement
CNT30638683Gossypium raimondiiCapsicum annuum64.7153.2985.45275reverse complement
CNT30178555Gossypium raimondiiSecale cereale64.9432.7889.13276forward
CNT30309040Gossypium raimondiiTriticum aestivum64.9465.8789.13276reverse complement
CNT30562726Gossypium raimondiiActinidia chinensis30.5932.7590130forward
CNT30554621Gossypium raimondiiOryza glaberrima19.2938.1489.0282forward
CNT30668159Gossypium raimondiiTriticum dicoccoides6438.186.4272forward
CNT3082954Gossypium raimondiiBrassica juncea45.8816.5385.64195forward
CNT30126841Gossypium raimondiiCorymbia citriodora25.1828.7688.79107forward
CNT30713553Gossypium raimondiiMalus domestica golden64.9440.9589.86276forward
CNT30623039Gossypium raimondiiDaucus carota52.4785.1190.13223reverse complement
CNT30364730Gossypium raimondiiSorghum bicolor64.9448.6888.04276reverse complement
CNT30370808Gossypium raimondiiOryza glumipatula19.2937.7990.2482forward
CNT30705531Gossypium raimondiiPrunus avium38.3558.2188.34163reverse complement
CNT30332809Gossypium raimondiiDioscorea rotundata64.9439.9489.86276reverse complement
CNT30100804Gossypium raimondiiOryza rufipogon64.9434.3788.41276forward
CNT30574740Gossypium raimondiiOryza barthii41.8836.1888.76178forward
CNT30604668Gossypium raimondiiOryza punctata55.2953.5388.51235forward

Expression of CNT30609809

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENRVRRGRENATIQCSSTRHFGAEVIHTILLGKA*

>peptide 2 (68 aa)
MNGTKLSVEAVGYKNVSAGERSTLGESTRVSGSRRSGSENVGLSNANISENLMPQKPKGSSARFIYVE*

Sequence

>CNT30609809
AGAGAGTAATAGCTCACTGATCGAGCGCTCCTACGCTGAAGATGAACGGGACTAAGCTATCTGTCGAAGCTGTGGGATATAAAAATGTATCGGCAGGGGA
GCGTTCCACCTTAGGAGAAAGCACCCGCGTGAGCGGGAGTAGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTAGTGAGAATCTAATG
CCCCAAAAACCCAAGGGTTCCTCCGCAAGGTTCATCTACGTAGAGTGATTCAGGGCTTAAGATCAGGCCGAAAGGCGTAGTTAATGGAAAATAGGGTAAG
AAGGGGTAGAGAAAATGCCACGATCCAATGTTCGAGTACCAGGCACTTCGGCGCTGAAGTAATCCATACTATACTCCTAGGAAAAGCTTGAACGACCTTC
AACAAAAGGGTACCTATACCCGGAA