« Back to Gossypium raimondii search


Detailed information on CNT30609694


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 2e-76

BLAST vs NONCODE:
NONBRAT001321, E-value = 5e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521250Gossypium raimondiiSetaria italica11.6223.8683.1589forward
CNT30547549Gossypium raimondiiIpomoea triloba53.5252.9782.2410forward
CNT30267640Gossypium raimondiiChenopodium quinoa5052.7583.03383forward
CNT3069241Gossypium raimondiiQuercus suber49.3585.9183.33378forward
CNT30380641Gossypium raimondiiManihot esculenta48.8354.1285.29374forward
CNT30200244Gossypium raimondiiPisum sativum53.6687.6381.27411forward
CNT3048083Gossypium raimondiiPrunus dulcis53.6658.5583.7411forward
CNT3090157Gossypium raimondiiSolanum tuberosum33.8140.1684.56259forward
CNT30304662Gossypium raimondiiTriticum aestivum16.7124.8581.25128forward
CNT30565750Gossypium raimondiiActinidia chinensis35.1224.4883.27269forward
CNT3084857Gossypium raimondiiVigna radiata53.3933.3180.93409forward
CNT30508643Gossypium raimondiiSolanum lycopersicum53.7953.5883.01412forward
CNT30443283Gossypium raimondiiAegilops tauschii16.7120.8582.81128forward
CNT30254117Gossypium raimondiiAvena sativa22.7232.2879.89174forward
CNT30613891Gossypium raimondiiArabis alpina17.7533.7585.29136forward
CNT30477972Gossypium raimondiiArabidopsis halleri45.1710081.79346forward
CNT30358587Gossypium raimondiiLactuca sativa44.2661.7584.96339forward
CNT30414942Gossypium raimondiiPapaver somniferum50.1347.2382.55384forward
CNT30644610Gossypium raimondiiCannabis sativa51.9686.5281.16398forward
CNT3053477Gossypium raimondiiAmborella trichopoda48.8359.7480.75374forward
CNT3022780Gossypium raimondiiPopulus trichocarpa13.0540.4984100forward
CNT30328607Gossypium raimondiiAsparagus officinalis16.7122.3881.25128forward
CNT3051266Gossypium raimondiiCucumis sativus51.9653.0780.4398forward

Expression of CNT30609694

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ILFDGSEDYLLCYRTANKRFMMVKHPLSFQRFTPNI*

>peptide 2 (85 aa)
MNSTQISILEQSDEISFGSLLKSGDGTALEPQIRLEILSNFSHKPLERKLSDQEFGALLVLPDFPKSYSSWPETVRLLHSSGRRC*

Sequence

>CNT30609694
GAATTCTGTTTGATGGAAGCGAAGACTACTTGCTGTGCTATAGAACAGCGAACAAACGATTCATGATGGTAAAGCATCCATTAAGTTTTCAACGATTTAC
ACCAAACATTTGAAGAGACCGCAAAGACAATAAAATGAGCAAAAAGCTTAGATCTCAAATCCTAAGCATCAATCAACTAAAAACAAGCTGACCTAAGCTC
TCTCTCCTCTAATCCTCCTAGCAAGCTGGATATCTTTAGGCATGATTGTAACCCTCTTAGCATGAATAGCACACAGATTAGTATCCTCGAACAGTCCGAC
GAGATAAGCTTCGGCAGCCTCTTGAAGAGCGGCGACGGCACTGCTTTGGAACCTCAAATCCGTCTTGAAATCTTGAGCAATTTCTCTCACAAGCCTCTGG
AACGGAAGCTTTCGGATCAAGAGTTCGGTGCTCTTCTGGTACTTCCTGATTTCCCTAAGAGCTACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTC
CTCCGGTCGCCGGTGCTGACTTCCGAGCAGCTTTAGTGGCCAGCTGCTTACGTGGAGCCTTCCCACCGGTTGATTTTCTAGCAGTTTGCTTGGTACGAGC
CATATGTCAAAGCGATTTGATGAGAAAATAAGTGTTTAGATTGCTTGAAAGCAAGAGTGTTTTGAAGGAAAAGGTTTTCGATGTAACGATTGGGTGAATC
TGGGGACATATAAAAGGGAAAGCGGGAATGAGTGTTTAGGAAATATTTTAAATAGGTCAATATGTG