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Detailed information on CNT30609661


BLAST search results

BLAST vs Swiss-Prot:
sp|P21434|RK2_NICDE, E-value = 1e-64

BLAST vs NONCODE:
NONBRAT006199, E-value = 2e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617713Gossypium raimondiiSesamum indicum22.0519.3483.91379forward
CNT30268703Gossypium raimondiiChenopodium quinoa18.528.4285.53318forward
CNT30199079Gossypium raimondiiPisum sativum22.5136.8991.47387forward
CNT30505351Gossypium raimondiiNicotiana attenuata23.7911.7785.82409forward
CNT3093954Gossypium raimondiiSolanum tuberosum23.0924.2591.94397forward
CNT30177809Gossypium raimondiiSecale cereale19.7244.6692.63339forward
CNT30225539Gossypium raimondiiHordeum vulgare3.7222.4693.7564reverse complement
CNT30541450Gossypium raimondiiBrassica napus20.0712.2787.25345forward
CNT30511784Gossypium raimondiiSolanum lycopersicum7.7420.2494.74133forward
CNT30314546Gossypium raimondiiCamelina sativa20.2438.894.54348forward
CNT3077259Gossypium raimondiiBrassica juncea23.3345.0194.01401forward
CNT30265789Gossypium raimondiiBrassica rapa19.0240.3793.58327forward
CNT30229782Gossypium raimondiiAnanas comosus12.897.7894.55220forward
CNT30717682Gossypium raimondiiMalus domestica golden8.5562.5591.84147reverse complement
CNT30360476Gossypium raimondiiLactuca sativa23.2744.6994400forward
CNT3054389Gossypium raimondiiAmborella trichopoda22.5115.991.99387forward

Expression of CNT30609661

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTSPSMPCGNDFSGITTFTTTMLSIDQIISWNGFHLTVLKLILPMDYCPNE*

>peptide 2 (29 aa)
MVSPIIAPLGCKIYLFSPSPYYMRQMFAF*

Sequence

>CNT30609661
ATTGAGTTTTAGGTTTCATCGTAAACCTAATTGGTTCCTTCCAATTACGTAAATCAATAGTTCAAACCGTACTCAAAGGTAAGGCATTTCCCATTTTTAT
AGGAACTTTTGTACCAGAAACAATGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCCATACTATATGAGACAAATG
TTTGCATTTTGATTAGGGTCGTATTCTATGGTTAGGATTCTACCATATATGTCTTTTTCATTTCGTCGAAAATCAATTTTACGGTATAAACACTTATGAC
CTCCCCCTCTATGCCTTGCGGTAATGATTTTTCTGGCATTACGACCTTTACCACAACAATGCTGTCCATAGATCAAATTATTTCGTGGAATGGATTTCAC
TTGACTGTCCTTAAATTAATCCTTCCCATGGATTATTGTCCCAACGAATAATTAATTGTAGGGGTGAAATCTTAATAGAATTCAAAAAAGCGAGGAGTAA
GTCCCAAGCCATAAAATAAGAAAAAAAATACAAAATTCTCATGTTTATAGGATTAAACAAAGGGATTTGCAAATAAGAGTGTCAATGCTACAACCAGCCC
ATAAATTGTTAAAGCTTCCATAAAAGCCAAACTAAGAAATAAAGTACATTATATTTTTCCCTCCGCCTCGGGTTGTCTCACAATACCTTCTATAGCTTGG
CCCACAACAGTACCTTGACCAACTCCAAGTCTAATAGAAGCAAGCCCGACAGCCAACCCAGCAGTAATAACGGAAGTGGCAGAAATCAGTGGATTCATGA
TAAGTTCCTCGCACCAAAATAAAGAAATGGTTCATGATACACTCATCCAATGAATTTTGACTTAATTATATTATTCCATCGCTAAGATTCAACCTACCGA
AGTAACTAAGAACTCTGAATGGAAGTGAGAAGATTATTGAATCGTCAGAACTATTTCGACATCTTTCTTTTAGGTCATATTCGCTAGATTTTTTTGAATC
CGCACATACTTTGTTCTTCCCTTTCTTTTTTCCAACCCATTCTTTGCTTTGAATTCTTCGTTTGTCTTTATTTTATCTCTTTATTCGTTCAATTCAGAGT
CAAAGACGAAACAGAGGAACTTTTATTCTTCTATTGGAATACCTATCTAAATCCACAGTAGTAGGTTGGATTAGATATATTTTGAGTTTGTATATAACTA
GTCAATATCTAATATCCCATATACATGTGTTTCTTACATAACGTAAACCAACTATTCATGTCTTAGATTCAATCAGATTTTAGAATTATTCCTCAAAGGA
TAGACAAAAGCTGTCTTATAGCCATTAGATTCCATATACCTAATTTTACCCCCCTTTTTTTTCCTAATCATTTTTATATCGTTTTTTGTAATGTAAATTC
GTCTCTTCCTTTTATTTTTTATTTAGCATTATCTTACATGGATACAATCTAAATGGACGAATTCATTAGACCAAATCATTGCATATAAATAAAACATCAA
TATCAGTATTTGATTGAGCTAAGTTCATGCAATTTATTTTATTATTTATGAAAAAGTTTATTTTGGTCAATCATTGAATTGAATGAAGAAATCGACTGAA
ATGGGAATCATTCTATATAAAGAATAGCTTTTTAAAAATCATAGACCCTAAATTGATACCATAAAAATTCCTATTCTAATTAGGACTCATAATATTGAAA
TTGAATAAACAAAATCAAT