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Detailed information on CNT30609560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3025537Gossypium raimondiiPopulus trichocarpa19.9541.684.94166forward
CNT30148821Gossypium raimondiiBrachypodium distachyon9.1336.7189.4776forward

Expression of CNT30609560

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RILVIISAKECSPVLPDMPSSTYSCKGSIS*

Sequence

>CNT30609560
CGAATACTGGTAATAATATCAGCAAAAGAATGTTCTCCTGTACTTCCAGACATGCCAAGCTCCACATATTCTTGTAAGGGATCGATTTCGTAAAAGATAG
GATCAATAAATGGGAATTCACCGAAACTCAATCTTTGTGAGATCGTCAATATTGTACCAAAGGTATTTTTAGAGTATACCGAATCAGTATAGCTATCCTT
CTTCTGACACAGCAGTGCAATTTCAAACAGTATATCAACGTGAAGTGCTAGATAATTTCTTTCTTCTTCTTGCTTGTCGATGTATAACCAGGTATCATGC
AATAGAAAATTCCTCAAATTCCTGGAGGTATTGGCTTAGGCCTAGAAACGAAATATCAGGTAACCCGTGAATCCAATGAGTTGGTTTATAATAATTCATG
AAGGAAATTATCATATTTTCGCAAGTCAATTAGATGCGAAATATAAAAATTGACTTTTTTTCGTAGTTGCACAAGAGGTTTTATTTTTTTTTGAAGTCCT
CTTTTTTTATTTTAAGGAATTTCTTAGTCGTCTAGTAACAAGTAAGAGTAGTCGATAGTATTAGATATAGACAAAAAAAAAGAGCAAGGAATAAATTTTT
TTTCTACTAATCAATATTTGTGAGGCGGCCTTTCTTGTATTCTTGTATTAGATCCAAAGGTTTTTTCTTGACCTAACTACAAAGATGTTGGATCAATTTC
TTTTCTTTTCTACTCTTGTCATGCCGCTCTATTTTTGTGAATACCGTTTATAATGATTGATGAAGCAAAAAATTTCATTTGAACTTATTATTTCAATTGG
TATTTTTGCTTATCCCCCTCTCGTTTAAAAAT