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Detailed information on CNT3060956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Arabidopsis lyrataCorylus avellana19.6437.9482.1162forward
CNT30698212Arabidopsis lyrataQuercus lobata19.3924.1780.62160forward
CNT30235661Arabidopsis lyrataBrassica oleracea29.3351.0590.5242forward
CNT30309702Arabidopsis lyrataCamelina sativa21.8218.4886.67180forward
CNT30611294Arabidopsis lyrataArabis alpina20.9710.4886.13173forward

Expression of CNT3060956

Peptides detected in this lncRNA

>peptide 1 (47 aa)
RVNRDYKCSEASTPITKHLSSRRSSASRTFESSNLSISYDLQLILTG*

>peptide 2 (56 aa)
MNWVQRKTYLYNVTFGLYMLDWWERYLFNSLVIILMWFILYNGSRYFSELCKRHLS*

>peptide 3 (34 aa)
MPTNSFVLLCTSFFGIISDHVTVHISFIPMYFLE*

Sequence

>CNT3060956
CGAGTAAACCGGGATTATAAGTGTTCTGAAGCTTCTACACCAATCACCAAACACCTCTCCTCACGAAGATCTTCAGCTTCAAGGACTTTTGAATCGTCGA
ATCTCTCTATTAGTTACGATCTCCAACTGATTCTTACTGGGTAATTTTCAAAAACTTGAAAATTGAGTGTTTCCGACCGTCGAATCGGATTCGATGAACT
GGGTTCAACGAAAAACCTATCTTTACAACGTCACCTTCGGGCTTTACATGCTTGATTGGTGGGAACGATACCTATTCAATTCTTTGGTGATAATCTTGAT
GTGGTTTATTCTGTACAATGGATCTCGCTATTTTTCAGAGCTCTGCAAGAGGCATCTTTCATGAAACCAGGTCATAGTCATCACGCCATGGAAGCTTGAA
ACCGACATGGTTATCTGAGACGTATGCCAACAAACTCCTTTGTGCTGCTTTGCACCTCCTTCTTTGGCATAATTTCTGATCATGTAACTGTTCATATATC
ATTTATTCCCATGTATTTTTTGGAATGAACTTCATTTGTTCGATTCTACTTGCTTCTACTTCAAATTTTGAGACAGGGCCAAATCAACTACTTGCATCTT
TTGATGTTTAGAGTCCATGAACTCAAAAAATTTAGGTGTTTTGTGGGCACTTAAAGCTTAACGAATCTGATATAATCTCCATTTTATTTTCATTGATCTC
CTGATGTTGTAGTAGTTCTAGTTCCGAATTCTGGATTCGGAAGATTTTGTGTCCTCTGTAGTGACGGGTTTCTAAGAAAGGATACATGTCTATGTGCGAA
GGAGAGTCCAAGATTTTCATTCTAG