Detailed information on CNT30609506


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619235Gossypium raimondiiSesamum indicum31.486.1994.77153reverse complement
CNT30635771Gossypium raimondiiCapsicum annuum31.6942.7895.45154reverse complement
CNT30592641Gossypium raimondiiMusa acuminata31.692.2989.61154reverse complement
CNT30147428Gossypium raimondiiMedicago truncatula31.692089.61154forward
CNT30721405Gossypium raimondiiTriticum spelta31.6965.5390.26154reverse complement
CNT30354707Gossypium raimondiiLactuca sativa24.4912.0396.64119reverse complement
CNT30431658Gossypium raimondiiPapaver somniferum22.846.9992.79111reverse complement

Expression of CNT30609506

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MGKKCLIYIYIYIIRFIHTSIPCRGRLTACWRGAV*

>peptide 2 (41 aa)
SNSGNGWSRGGPKMDRCRTGGGLVPEVNVEKKREEGSRARG*

>peptide 3 (51 aa)
MLRKKGRRAVGQGVRDLWKKENGKWGKWVEPWRAGGGLVPDWRWIGAGGEG*

Sequence

>CNT30609506
CTCTAATTCTGGAAATGGGTGGAGCCGTGGAGGACCGAAGATGGATCGGTGCCGGACCGGAGGTGGATTGGTGCCGGAGGTGAATGTTGAGAAAAAAAGG
GAGGAGGGCAGTCGGGCAAGGGGTTAGGGATTTGTGGAAGAAGGAAAACGGGAAATGGGGGAAATGGGTGGAGCCGTGGAGGGCCGGAGGTGGATTGGTG
CCGGACTGGAGGTGGATCGGTGCCGGAGGTGAAGGTTGAGAAAAAAATAGAGGAGGGCAGTTGGGCACTAGGGATTTCTGGAAGAGGGGAAATGGGGAAG
AAATGTTTAATATATATATATATATATATAATTCGATTCATCCACACTTCCATTCCTTGTAGAGGAAGGCTAACTGCTTGCTGGCGGGGAGCTGTATGAG
CGGTAACGTCCACGTACGGTTCCGTGAGAAGGGCGGTGGATAGAAATGGCCTTGTTGTACCTTACTCTCGTCTTCAATGGGGTCTG