« Back to Gossypium raimondii search


Detailed information on CNT30609407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043839Gossypium raimondiiPrunus dulcis9.192098.1153forward
CNT30236394Gossypium raimondiiBrassica oleracea13.8621.6293.7580forward
CNT30309275Gossypium raimondiiCamelina sativa13.8635.7188.7580forward
CNT3075181Gossypium raimondiiBrassica juncea13.8621.9293.7580forward
CNT30261820Gossypium raimondiiBrassica rapa13.8625.5693.7580forward
CNT30115210Gossypium raimondiiEutrema salsugineum13.5231.7193.5978forward

Expression of CNT30609407

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MALDVNFLIFLAQSCTHLAFSFYLQMEDYGYRFDFGGCSY*

>peptide 2 (32 aa)
LAFKPIYIISKPYLSLPHFPRSLRRRTLHEWF*

Sequence

>CNT30609407
TTTAGCTTTTAAGCCTATATATATAATCTCAAAGCCTTACCTTTCTCTTCCCCATTTTCCTCGCAGCCTCCGTAGAAGAACACTACACGAGTGGTTTTGA
ACTGCAAAAGGAGATCGATTTCGAACCCTTTTCACCATGAGAGCTAAGTGGAAGAAGAAGCGCATGAGGAGGTTGAAGAGGAAGAGAAGAAAGATGAGGC
AAAGATCTAAGTAGTCTAATTTTATCTTAAAGCTAGCAATTTGGTCTATGTTTCTTTAGATTTTCTGTTGTTTGATGGATACTTTACTTTAAAAGGATTT
AAGTTATCTTTATCGAAACCTTTTGAATATTCTGGAAACATGTTATTGTGTTTTCTATTAAAAGCTTATGGCTTTGGATGTTAATTTTCTGATATTTTTG
GCTCAAAGTTGCACGCACTTGGCGTTCTCATTTTATCTTCAAATGGAAGATTATGGCTACAGATTTGATTTTGGGGGATGTAGTTATTGACTAAGTTTAT
GAGATATAGCTTGTTTCTTTGGGACATGATTCTAGAAGTTCTGGTATGATTGTCAGATTTTTTATATAGAACTACAT