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Detailed information on CNT30609156


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 4e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274489Gossypium raimondiiChenopodium quinoa70.4374.3583.19910forward
CNT3096885Gossypium raimondiiSolanum tuberosum68.1984.9682.41881forward
CNT30172216Gossypium raimondiiTrifolium pratense69.2752.5282.01895forward
CNT30356895Gossypium raimondiiLactuca sativa66.3390.0284.01857forward
CNT30334110Gossypium raimondiiCynara cardunculus70.5185.8683.53911forward

Expression of CNT30609156

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MEREGVRRCLYRREGVDFLRLEGLEETRKLRSDESACSYVSHTVVFLRLAYATC*

>peptide 2 (52 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALDGERGGEAMLI*

>peptide 3 (40 aa)
MVSELSTSKVMVLPVKVFTKICIPPRRRRTRWRVDSFWML*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30609156
ACGAAATCACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTTATTTGT
GACCATCTTAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATGTT
ATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTTGCCTTC
ACATTGTCAATTGTATCCGAACTTTCCACCTCCAATGTGATTGTTTTCCCAGTCAATGTCTTAACGAAAATCTGCATGCCTCCACGAAGCCTCAAAACAA
GGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGAT
CCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCCGAACTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATC
TGCATTCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGA
AGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGT
CTTGCCGGTTAAGGTTTTGACGAAGATCTGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGGCCAAGGTA
CGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGT
CAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTT
GAATCGGTCTGCGTTGGATGGAGAGAGAGGGGGTGAGGCGATGCTTATATAGAAGAGAGGGTGTGGATTTTCTTAGGTTGGAAGGTCTGGAGGAAACGAG
AAAATTGCGGTCAGATGAGTCGGCGTGCAGTTACGTTAGCCACACGGTGGTGTTTCTAAGATTGGCCTACGCAACTTGCTAATTCATTCTCG