« Back to Gossypium raimondii search


Detailed information on CNT30609040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Gossypium raimondiiSetaria viridis23.2617.9886.92107forward
CNT30515355Gossypium raimondiiJuglans regia52.6139.3582.23242forward
CNT30525458Gossypium raimondiiPhaseolus vulgaris39.5710.0384.62182forward
CNT30629575Gossypium raimondiiVigna unguiculata37.3941.9581.98172forward
CNT30708472Gossypium raimondiiGlycine max28.730.8483.33132forward
CNT30400439Gossypium raimondiiTriticum turgidum23.9141.5186.36110forward
CNT30567058Gossypium raimondiiActinidia chinensis25.8733.0689.08119forward
CNT30588696Gossypium raimondiiMusa acuminata34.3558.7484.81158forward
CNT30236705Gossypium raimondiiBrassica oleracea39.5738.6481.32182forward
CNT30171605Gossypium raimondiiTrifolium pratense31.7411.6582.88146forward
CNT30443761Gossypium raimondiiAegilops tauschii21.5220.8485.8699forward
CNT30256504Gossypium raimondiiAvena sativa21.5223.0286.8799forward
CNT30311330Gossypium raimondiiCamelina sativa21.337.1283.6798forward
CNT3010282Gossypium raimondiiZea mays23.4819.1287.04108forward
CNT30344601Gossypium raimondiiEragrostis tef26.0919.990120forward
CNT30360105Gossypium raimondiiLactuca sativa40.8721.3681.91188forward
CNT3034379Gossypium raimondiiTheobroma cacao45.6526.9288.57210forward
CNT3058384Gossypium raimondiiAmborella trichopoda41.7440.2581.77192forward
CNT3037808Gossypium raimondiiCucumis melo41.5226.283.25191forward
CNT30580093Gossypium raimondiiEchinochloa crusgalli23.4813.9487.04108forward
CNT30497299Gossypium raimondiiDigitaria exilis33.715.3383.87155forward
CNT30551312Gossypium raimondiiOryza brachyantha26.0911.3686.67120forward

Expression of CNT30609040

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRKEVKEMWWLCHSSLVCWRPLLCVLFFFF

>peptide 2 (39 aa)
CILRTFWGPWRIPRGRKRRRGTSSSRCPSPCFVGAQRRR*

>peptide 3 (60 aa)
LYSSNFLGSLENPKGSKAPPGYFFFSVSFSMLRWCSTKAIDRNSMTKMVGRVPHGTGFPK*

>peptide 4 (43 aa)
MGLGSLSKWLGHLELLPILELLPSFLTLSPLVRWSRLTRHPVS*

>peptide 5 (41 aa)
LVFFELFGVLGESQGVESAAGVLLLLGVLLHASLVLNEGDR*

Sequence

>CNT30609040
CTTGTATTCTTCGAACTTTTTGGGGTCCTTGGAGAATCCCAAGGGGTCGAAAGCGCCGCCGGGGTACTTCTTCTTCTCGGTGTCCTTCTCCATGCTTCGT
TGGTGCTCAACGAAGGCGATAGATAGGAATTCAATGACCAAGATGGTGGGGAGGGTACCCCATGGGACTGGGTTCCCTAAGTAAGTGGCTTGGCCACCTG
GAATTGCTGCCCATTCTTGAGCTTTTACCCAGTTTCCTAACCCTAAGCCCTCTGGTAAGGTGGTCTAGGTTGACCAGGCATCCAGTCAGCTGACATGCTA
ACACGGTGGCCATGATTGGTACCAACAGCACTAGGCAACGATACGGCGGCGCCACTGAACTTGGACTTTGATGAGGAAAGAAGTGAAGGAAATGTGGTGG
CTATGCCACAGCTCATTAGTGTGTTGGCGGCCATTGTTGTGTGTTCTATTTTTTTTTTTT