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Detailed information on CNT30609009


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Gossypium raimondiiCorylus avellana75.6894.2682.41722forward
CNT30516063Gossypium raimondiiJuglans regia88.7885.7382.05847forward
CNT30701438Gossypium raimondiiQuercus lobata88.9958.1982.92849forward
CNT30500348Gossypium raimondiiCoffea canephora87.9555.7583.31839forward
CNT3020365Gossypium raimondiiCitrullus lanatus87.9548.0582.72839forward
CNT30525157Gossypium raimondiiPhaseolus vulgaris88.9971.1182.8849forward
CNT30629116Gossypium raimondiiVigna unguiculata89.9485.3782.4858forward
CNT30637410Gossypium raimondiiCapsicum annuum81.9744.9483.38782forward
CNT3096972Gossypium raimondiiSolanum tuberosum87.3268.7983.07833forward
CNT3088525Gossypium raimondiiVigna radiata81.3453.4182.6776forward
CNT30171746Gossypium raimondiiTrifolium pratense79.5698.5782.08759forward
CNT30154607Gossypium raimondiiPrunus persica88.5766.1282.13845forward
CNT30706355Gossypium raimondiiPrunus avium88.4754.9183.18844forward
CNT3032819Gossypium raimondiiTheobroma cacao63.7310090.3608forward
CNT3056329Gossypium raimondiiAmborella trichopoda88.5773.1680.95845forward
CNT3026527Gossypium raimondiiPopulus trichocarpa89.3187.2182.86852forward
CNT30120117Gossypium raimondiiCitrus clementina70.0298.3884.43668forward
CNT30174484Gossypium raimondiiVigna angularis49.0695.7185.47468forward

Expression of CNT30609009

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MWFTDHFSTTKSQMKITKTSRRHPIRNHHEGEGQDAEWTPSGYCSLLKFDHPPTASQQRSTSAGLEESPPCPES*

>peptide 2 (30 aa)
MVFPVKVFTNICIPPLRRRTKCRVDSFWML*

>peptide 3 (40 aa)
MVSELSTSKVMVFPVRVFTNICIPPLRRRTRWRVDSFWML*

Sequence

>CNT30609009
TTCCATACAGTAACTAAAGATGTGGTTCACTGACCATTTCAGCACCACAAAATCACAAATGAAAATTACGAAAACAAGCAGAAGACACCCAATTAGAAAC
CACCACGAAGGCGAAGGACAAGATGCAGAGTGGACTCCTTCTGGATATTGTAGTCTGCTAAAGTTCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAA
CCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTTTTCCCA
GTCAAAGTCTTCACGAATATCTGCATCCCTCCTCTAAGGCGCAGAACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCCGCAAGCGTCCTCCCAT
CCTCGAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATTGTGTCTGAACT
CTCCACCTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTCACAAAAATCTGCATTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGG
ATGTTATAATCCGCTAGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTGG
CCTTAACATTATCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCATCCCACCCCTAAGACGAAG
GACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGTTTTCCGGCAAAGATAAGCCTTTGTTGGTCTGGA
GGAATCCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATAGTATCGGAG