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Detailed information on CNT30608876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AT26|CESA1_ORYSJ, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672342Gossypium raimondiiSetaria viridis33.7129.2483.98181forward
CNT30639474Gossypium raimondiiNymphaea colorata27.1923.2586.3146forward
CNT30499576Gossypium raimondiiCoffea canephora27.1925.9882.88146forward
CNT30287901Gossypium raimondiiTriticum aestivum26.0752.8383.57140forward
CNT30393905Gossypium raimondiiTriticum turgidum22.1636.6282.35119forward
CNT30144912Gossypium raimondiiMedicago truncatula22.1644.2484.03119forward
CNT30314318Gossypium raimondiiCamelina sativa24.9543.7983.58134forward
CNT30216Gossypium raimondiiZea mays22.7239.6181.97122forward
CNT30229741Gossypium raimondiiAnanas comosus32.430.3179.89174forward
CNT30689838Gossypium raimondiiTriticum urartu24.7744.6381.95133forward
CNT30572236Gossypium raimondiiVitis vinifera36.8733.3979.29198forward
CNT3026929Gossypium raimondiiPopulus trichocarpa22.7221.8682.79122forward
CNT30102429Gossypium raimondiiOryza rufipogon35.752779.69192forward
CNT3051367Gossypium raimondiiCucumis sativus16.5727.7385.3989forward

Expression of CNT30608876

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSNHPDGKEKLAKKRTPGLVTTVYSIRHAGHNAHQTPLK*

>peptide 2 (39 aa)
MTQNCSFLHQSSILTPLHLSSSIPVAKMETKRRMNHMLAK

>peptide 3 (30 aa)
GETAFTGIKRSENELTVDATLTISGSFCSF*

Sequence

>CNT30608876
AGGAGAGACAGCATTTACCGGAATAAAAAGATCCGAAAATGAACTAACAGTTGATGCCACATTGACCATTAGCGGCAGCTTTTGTAGCTTCTGAGGTGAA
GGGGTCGATACGCACCCACAGCAATGAGAAGATGGAAGCAAGAAGTATAGACCACACGATGACAATTGTAGGGGTACGATTTTGACGACCCACCAAACCT
TTCAAGAAAGGATACAAATGAGCAATCACCCAGATGGCAAAGAAAAGCTTGCCAAAAAGAGGACCCCAGGATTGGTAACCACTGTTTATAGCATACGACA
CGCCGGCCACAATGCCCACCAGACGCCTTTGAAGTGACAGTGAAGTTGGTATCTATTCCAGCAAGCACTTTCAGAAGACCCTGGAAAACAGCAAAGAGAT
GAGCTGATGTCCCACCAATGACCCAGAATTGTTCATTTCTCCACCAGTCTTCGATACTGACACCACTCCACCTAAGCTCAAGTATTCCAGTGGCAAAAAT
GGAGACGAAAAGGAGAATGAACCACATGCTAGCAAAG