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Detailed information on CNT30608839


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000502, E-value = 3e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30262381Gossypium raimondiiBrassica rapa82.1856.9981.6913forward
CNT30174705Gossypium raimondiiVigna angularis8258.8983.86911forward

Expression of CNT30608839

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILDLTLSMVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (41 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALD

>peptide 3 (40 aa)
MVSELSTSKVMVLPVKVFTKICIPPRRRRTRWRVDSFWIL*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRKTRWRVDSFWML*

Sequence

>CNT30608839
ACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTTATTTGTGACCATCT
TAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAG
CCAAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTC
GATGGTGTCCGAACTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATTCCCCCGCGAAGACGGAGGACGAGGTGGAGG
GTGGATTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCT
TGTCTTGGATTTTAGACTTGACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATCTGCATACC
CCCACGAAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGA
CGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACATTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGG
TTAAAGTTTTGACGAAGATCTGCATACCCCCACGAAGACGTAAGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTC
CTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGTCAGAACTC
TCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTTGAATCGGT
CTGCGTTGGAT