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Detailed information on CNT30608822


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 1e-91

BLAST vs NONCODE:
NONBNAT007651, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Gossypium raimondiiSetaria viridis48.2138.8784.52323forward
CNT30522713Gossypium raimondiiSetaria italica20.4536.9386.13137forward
CNT30641074Gossypium raimondiiNymphaea colorata29.8554.583200forward
CNT30534291Gossypium raimondiiEucalyptus grandis20.4521.5182.48137forward
CNT30516889Gossypium raimondiiJuglans regia29.5532.7380.81198forward
CNT30377201Gossypium raimondiiArabidopsis thaliana47.3155.4283.91317forward
CNT30617295Gossypium raimondiiSesamum indicum12.8420.9890.786forward
CNT30728062Gossypium raimondiiCorchorus capsularis50.638.9283.48339forward
CNT30381383Gossypium raimondiiManihot esculenta35.6713.683.26239forward
CNT30402401Gossypium raimondiiBeta vulgaris36.1220.3787.19242forward
CNT30629386Gossypium raimondiiVigna unguiculata18.2147.2983.61122forward
CNT30196370Gossypium raimondiiPisum sativum47.3133.2683.6317forward
CNT30486254Gossypium raimondiiOlea europaea27.6148.385.95185forward
CNT30708222Gossypium raimondiiGlycine max43.8872.9580.95294forward
CNT30155931Gossypium raimondiiPistacia vera33.1371.6182.88222forward
CNT3092760Gossypium raimondiiSolanum tuberosum21.3420.6685.31143forward
CNT30291318Gossypium raimondiiTriticum aestivum37.9176.2883.46254forward
CNT30223001Gossypium raimondiiHordeum vulgare22.6954.6886.18152forward
CNT30390564Gossypium raimondiiTriticum turgidum16.1235.5385.19108forward
CNT30567082Gossypium raimondiiActinidia chinensis39.2559.7782.89263forward
CNT30586804Gossypium raimondiiMusa acuminata29.125.2680195forward
CNT30542792Gossypium raimondiiBrassica napus36.5756.4583.67245forward
CNT30553024Gossypium raimondiiOryza glaberrima30.7514.4383.5206forward
CNT30442409Gossypium raimondiiAegilops tauschii41.4941.4984.53278forward
CNT30252641Gossypium raimondiiAvena sativa59.5549.0881.95399forward
CNT30313575Gossypium raimondiiCamelina sativa32.8494.4285.45220forward
CNT3062349Gossypium raimondiiArabidopsis lyrata38.3629.5182.88257forward
CNT3078381Gossypium raimondiiBrassica juncea21.3453.5686.71143forward
CNT30261872Gossypium raimondiiBrassica rapa46.4235.1481.03311forward
CNT30614070Gossypium raimondiiArabis alpina44.9321.7883.72301forward
CNT305432Gossypium raimondiiZea mays28.2151.587.83189forward
CNT30203517Gossypium raimondiiHelianthus annuus46.4227.6785.53311forward
CNT30627268Gossypium raimondiiDaucus carota47.3125.6184.54317forward
CNT30681848Gossypium raimondiiTriticum urartu59.444.9781.66398forward
CNT30722476Gossypium raimondiiTriticum spelta41.4941.5584.17278forward
CNT30341625Gossypium raimondiiEragrostis tef59.5540.9282.71399forward
CNT30364844Gossypium raimondiiSorghum bicolor50.978.2182.4341forward
CNT30621035Gossypium raimondiiCajanus cajan29.428.885.79197forward
CNT30595966Gossypium raimondiiOryza meridionalis30.7533.6183.01206forward
CNT30369350Gossypium raimondiiOryza glumipatula32.9931.886.88221forward
CNT30433323Gossypium raimondiiPapaver somniferum59.5536.5779.7399forward
CNT30570854Gossypium raimondiiVitis vinifera20.969.6587.86140forward
CNT30706519Gossypium raimondiiPrunus avium40.632.8182.35272forward
CNT3033661Gossypium raimondiiTheobroma cacao3096.6386.07201forward
CNT3054138Gossypium raimondiiAmborella trichopoda48.0663.5181.06322forward
CNT3024644Gossypium raimondiiPopulus trichocarpa6019.6685.07402forward
CNT30322043Gossypium raimondiiAsparagus officinalis46.4237.1681.67311forward
CNT30119164Gossypium raimondiiCitrus clementina26.4237.9883.05177forward
CNT30330123Gossypium raimondiiDioscorea rotundata48.6632.0283.74326forward
CNT3099978Gossypium raimondiiOryza rufipogon32.5426.9184.86218forward
CNT30575061Gossypium raimondiiOryza barthii32.9924.3186.88221forward
CNT30117026Gossypium raimondiiOryza nivara2019.9485.82134forward
CNT30333708Gossypium raimondiiCynara cardunculus36.1229.8883.88242forward

Expression of CNT30608822

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MKVDAIFRPLGGMSHTLDFTLLGIHSTKYDEFLFWTLIICSSTSLVLILPRNIAEAVR*

>peptide 2 (58 aa)
PVQESFPPEHSCKLLTNPPKHLLNRSRISDESGCHFQTLRWDVTHARLHIVRDPLNKV*

>peptide 3 (29 aa)
MAWVSSTHHVFGIPHLLSQFRNSQVPILL*

>peptide 4 (52 aa)
MKKCRSGELEGAEADVVQGFIVQHHAFISILNKLMNRKGSIVWFNNCIGYLG*

Sequence

>CNT30608822
CCAGTGCAAGAAAGCTTTCCTCCTGAACATAGCTGTAAACTGCTCACTAACCCTCCTAAACATCTCCTGAATCGAAGTAGAATTTCCGATGAAAGTGGAT
GCCATTTTCAGACCCTTAGGTGGGATGTCACACACGCTAGACTTCACATTGTTAGGGATCCACTCAACAAAGTATGACGAATTCTTATTCTGGACATTAA
TCATTTGTTCGTCAACCTCCTTAGTGCTCATCTTACCCCGGAACATTGCAGAAGCAGTTAGGTAACGGCCATGGCGTGGGTCAGCAGCACACATCATGTT
TTTGGCATCCCACATCTGCTGAGTCAGTTCAGGAACAGTCAGGTTCCTATACTGCTGTGATCCTCTGGATGTCAAGGGTGCAAAGCCAACCATGAAGAAG
TGTAGGAGTGGCGAGCTTGAGGGTGCGGAAGCAGATGTCGTACAGGGCTTCATTGTCCAACACCATGCATTCATCAGCATTCTCAACAAGCTGATGAACA
GAAAGGGTAGCATTGTATGGTTCAACAACTGTATCGGATACCTTGGGTGAAGGGAAGACCGAAAATGTCAACATCATGCGATCTGGATACTCCTCCCTGA
TCTTGGAAATAAGAAGGGTTCCCATTCCAGATCCGGTACCGCCACCCAATGAATGACAAACTTGAAAACC