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Detailed information on CNT30608772


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06R75|NU1C_JASNU, E-value = 6e-59

BLAST vs NONCODE:
NONMEST004538, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Gossypium raimondiiSetaria viridis39.4932.1287.9124forward
CNT30531354Gossypium raimondiiEucalyptus grandis99.3611.6991.67312forward
CNT30317759Gossypium raimondiiCorylus avellana99.3615.392.95312forward
CNT30518402Gossypium raimondiiJuglans regia79.365.0193.57249forward
CNT30615574Gossypium raimondiiSesamum indicum10021.0992.36314forward
CNT3020678Gossypium raimondiiCitrullus lanatus36.3129.5392.98114forward
CNT30406240Gossypium raimondiiBeta vulgaris75.4891.5194.09237forward
CNT30201817Gossypium raimondiiPisum sativum91.446.4493.38287forward
CNT30712407Gossypium raimondiiGlycine max98.4124.9289309forward
CNT3096636Gossypium raimondiiSolanum tuberosum38.225.4985.83120forward
CNT30569544Gossypium raimondiiActinidia chinensis1008.593.95314forward
CNT30237694Gossypium raimondiiBrassica oleracea65.9218.996.14207forward
CNT30262672Gossypium raimondiiBrassica rapa35.991.5897.35113forward
CNT30215974Gossypium raimondiiHelianthus annuus99.3642.6289.42312forward
CNT30689544Gossypium raimondiiTriticum urartu62.13.1288.21195forward
CNT30596717Gossypium raimondiiOryza meridionalis99.3633.5586.86312forward
CNT30360555Gossypium raimondiiLactuca sativa99.3628.4991.99312forward
CNT30151942Gossypium raimondiiPrunus persica98.4113.1792.88309forward
CNT3057989Gossypium raimondiiAmborella trichopoda10059.8188.54314forward
CNT3035415Gossypium raimondiiCucumis melo10047.0192.04314forward
CNT30148081Gossypium raimondiiBrachypodium distachyon99.3630.888.14312forward
CNT30116024Gossypium raimondiiOryza nivara89.1762.588.21280forward
CNT30723989Gossypium raimondiiLupinus angustifolius35.998.1195.58113forward

Expression of CNT30608772

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LNIRFDTMLLILPPLLVNQKVISHILLEKKLEKR*

Sequence

>CNT30608772
CTGAATATTCGGTTTGATACCATGCTGCTAATTCTTCCTCCGCTTCTGGTAAATCAAAAGGTAATCTCTCACATTCTGCTAGAGAAGAAATTAGAAAAAC
GATAAACCCTATTGGTTGACGCCACAAATTCCATCCCCAAAAACCATATTTTGATTGCGCCTCAACTATATCAACTGTACTTGAACTGTTAGATAATTAT
AATATTGATAAAACACATAGAGTTAATGGTATTTCATAACTAATCGATTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATCCGT
ATCCTGACATAAGA