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Detailed information on CNT30608677


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728102Gossypium raimondiiCorchorus capsularis71.3661.1887.85922forward
CNT30169898Gossypium raimondiiPistacia vera70.5151.7384.96911forward
CNT30171101Gossypium raimondiiTrifolium pratense70.6754.982.15913forward
CNT30120599Gossypium raimondiiCitrus clementina70.5191.3782.99911forward
CNT30330420Gossypium raimondiiDioscorea rotundata70.6753.9681.49913forward

Expression of CNT30608677

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILDLTLSMVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (30 aa)
MVLPVKVFTKICIPPRRRRTRWRVDSFWIL*

>peptide 4 (54 aa)
MEREGVRRCLYRREGVDFLRLEGLEETRKLRSDESACSYVSHTVVFLRLAYATC*

>peptide 5 (52 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALDGERGGEAMLI*

Sequence

>CNT30608677
ACGAAATCACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTTATTTGT
GACCATCTTAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATGTT
ATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTTGCCTTC
ACATTGTCAATTGTATCCGAACTTTCCACCTCCAATGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATTCCCCCGCGAAGACGGAGGACGA
GGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGAT
GCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATC
TGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGA
AGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACATTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGT
CTTGCCGGTTAAAGTTTTGACGAAGATCTGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGGCCAAGGTA
CGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGT
CAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTT
GAATCGGTCTGCGTTGGATGGAGAGAGAGGGGGTGAGGCGATGCTTATATAGAAGAGAGGGTGTGGATTTTCTTAGGTTGGAAGGTCTGGAGGAAACGAG
AAAATTGCGGTCAGATGAGTCGGCGTGCAGTTACGTTAGCCACACGGTGGTGTTTCTAAGATTGGCCTACGCAACTTGCTAATTCATTCTCG