« Back to Gossypium raimondii search


Detailed information on CNT30608664


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30165846Gossypium raimondiiPistacia vera82.1876.6684.12913forward
CNT3031526Gossypium raimondiiTheobroma cacao82.985.0489.03921forward
CNT30726149Gossypium raimondiiLupinus angustifolius82.274881.73914forward
CNT3066362Gossypium raimondiiSelaginella moellendorffii82.0992.4982.24912forward

Expression of CNT30608664

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALD

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILDLTLSMVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (40 aa)
MVSELSTSKVMVLPVKVFTKICIPPRRRRTRWRVDSFWIL*

Sequence

>CNT30608664
ACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTTATTTGTGACCATCT
TAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAG
CTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTC
AATTGTATCCGAACTTTCCACCTCCAATGTGATTGTTTTCCCAGTCAATGTCTTAACGAAAATCTGCATGCCTCCACGAAGCCTCAAAACAAGGTGAAGG
GTCGATTCCTTCTGGATGTTATAATCAGCCAAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATCCCTTCCT
TGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCCGAACTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATTCC
CCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGA
CGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGG
TTAAGGTTTTGACGAAGATCTGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTC
CTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGTCAGAACTC
TCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTTGAATCGGT
CTGCGTTGGAT