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Detailed information on CNT30608646


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-157

BLAST vs NONCODE:
NONTPRT002153, E-value = 6e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3044343Gossypium raimondiiPrunus dulcis67.576.7685.82677forward
CNT30153569Gossypium raimondiiPrunus persica67.775.2886.01679forward
CNT30334113Gossypium raimondiiCynara cardunculus68.3938.0383.38686forward
CNT3051148Gossypium raimondiiCucumis sativus68.357.4283.65685forward

Expression of CNT30608646

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (35 aa)
MEREGVRRCLYRREGVDFLRLEGLEETRKLRSDESA

>peptide 4 (52 aa)
MVSELSTSRVMVLPVRVLTKICIFGELIEKRFKKSLNRSALDGERGGEAMLI*

Sequence

>CNT30608646
GCAGATACGAAATCACCAAACTTTTATTCCAAACAGAAGGTTTACTTAGATTAACATGTTACATTCAGAGATAAGAAAATAGGCACTTTCCTAAAGGCTT
ATTTGTGACCATCTTAAGCTAGAACAAAGACAGAAGAAGAATTAACTTCTCACTGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTG
AATGTTATAATCAGCTAAAGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATCCCTTCCTTGTCCTGAATCTTC
GCCTTTACATTGTCGATGGTGTCCGAACTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCATACCCCCACGAAGACGGA
GGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGG
TGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACG
AAGATCTGCATACCCCCACGAAGACGGAGGACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTC
CGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGT
GATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGATTTAAGAAGAGCTTGAATCGGTCTGCGTTGGATGGA
GAGAGAGGGGGTGAGGCGATGCTTATATAGAAGAGAGGGTGTGGATTTTCTTAGGTTGGAAGGTCTGGAGGAAACGAGAAAATTGCGGTCAGATGAGTCG
GCG