| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30200777 | Gossypium raimondii | Pisum sativum | 44.57 | 26.28 | 85.37 | 123 | forward |
| CNT30170457 | Gossypium raimondii | Pistacia vera | 97.83 | 21.26 | 81.48 | 270 | reverse complement |
| CNT3090025 | Gossypium raimondii | Solanum tuberosum | 40.58 | 4.6 | 89.29 | 112 | reverse complement |
| CNT30559192 | Gossypium raimondii | Actinidia chinensis | 26.81 | 10.15 | 94.59 | 74 | reverse complement |
| CNT30235780 | Gossypium raimondii | Brassica oleracea | 48.91 | 14.5 | 88.89 | 135 | forward |
| CNT30555141 | Gossypium raimondii | Oryza glaberrima | 36.59 | 14.83 | 84.16 | 101 | reverse complement |
| CNT3017135 | Gossypium raimondii | Zea mays | 37.32 | 21.87 | 89.32 | 103 | reverse complement |
| CNT30360854 | Gossypium raimondii | Lactuca sativa | 45.29 | 23.54 | 90.4 | 125 | forward |
| CNT30117202 | Gossypium raimondii | Oryza nivara | 36.59 | 5.42 | 85.15 | 101 | forward |
>CNT30608460
AAAGAACATATTTCATTTAGCTCCTTCATGCCTACTATAACTAGTTATTCGGTTTTTTACTAGCAGCTTTAACTATAACCCCAGCTTTATTTATTAGTCT
GAGTAAGATACGACTTATTTGAAAATTAATTCAATGAACGAACAATTCATAAAAACAAAGCTTTCTGTCCTATTCCATATATTCTATAGCTCCCTACCGT
GTTAATTATCAATTATTAGGTATTGATATTCATGGGCAATAGAAATTAATATTTAGGGATATATATTACCTTTATT