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Detailed information on CNT30607906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506120Gossypium raimondiiNicotiana attenuata55.9454.781.56320forward
CNT3091613Gossypium raimondiiSolanum tuberosum69.5852.6582.16398forward

Expression of CNT30607906

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MWDCNLVRLDCTQEKWGYKREMWGYRKEMWGCTKEMWGCMMEMWGCTMEKWGYMQEKWGYMQEKWGYIRVKWGCS*

>peptide 2 (34 aa)
MLDCKDWKETTLDYLVSMPETDCTWLTAGCNLER*

Sequence

>CNT30607906
CTGTAATTAGGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTACTTGGTGAGTATGCCAGAGACGGACTGTACTTGGCTGACTGCGGGT
TGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGATGTGGGACTGTAACTTGGTGAGGTTGGACTGTACCCAGGAGAAGTGGGGCTATAAGCGGGAGATGT
GGGGCTATAGGAAGGAGATGTGGGGCTGTACGAAGGAGATGTGGGGCTGTATGATGGAGATGTGGGGCTGTACGATGGAGAAGTGGGGCTATATGCAGGA
GAAGTGGGGCTATATGCAGGAGAAGTGGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTGGGACTGTAACTGGGGGATGTGGGACTGTAAC
TTGGAGATGTAGGGCTATAGCTTGGTGAGGTTGGAGAATATGAGGGGCTGGTAGGAGAGTAGGCTGGACTTGTCGGACTGTATCCTGGAGATGATGGGCT
GTAACCGGGGGATGACGTAGGAGAGAATGCCATTCCACCAACATAAGGCGAGAACTGTGCATCTGAAATGGG