Detailed information on CNT30607747


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3C1I3|PSBC_NICSY, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196267Gossypium raimondiiPisum sativum84.7130.2989.35338forward
CNT30284073Gossypium raimondiiTriticum aestivum84.7110.7487.28338forward
CNT30539896Gossypium raimondiiBrassica napus22.315.1196.6389forward
CNT30234565Gossypium raimondiiBrassica oleracea80.9550.5593.5323forward
CNT30257701Gossypium raimondiiAvena sativa65.4137.6186.59261forward
CNT30628236Gossypium raimondiiDaucus carota84.7131.0992.31338forward
CNT30120788Gossypium raimondiiCitrus clementina17.2932.5595.6569reverse complement
CNT30148151Gossypium raimondiiBrachypodium distachyon41.8511.9391.02167forward
CNT30116821Gossypium raimondiiOryza nivara40.112.4986.25160forward

Expression of CNT30607747

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKKILQEFQVPEVHDKYHQSSIQQRKLSEVLQIQSMERCL*

Sequence

>CNT30607747
CTATAATTAAATTTAATCACTTTAATATTAAATTTAATCTATTATTTATCTACAAGATAAAGAGCCTTGAATACTAGAAGAAAAGCACCTATACCTAGCA
AAATTAAGTGAATACCCAAAATTGTGGTCATTTTATTTCTATCTTTCCATACATAACCGAAAAATGAAAAAGATTCTTCAAGAGTTTCAGGTCCCAGAAG
TGCATGATAAATACCACCAAAGCTCAATACAACAGAGGAAATTAAGTGAAGTACTCCAAATACAAAGTATGGAAAGGTGTCTATAACTTCTCCACCAGGA
CCTACCCCCTAGCCTAGAGTAGCTAGGTGGGGAAGTAAAATTAATCCTTGTTCGTACATGGGTTTTTCTGGGACAAAATGAGCCACTTCAAATAAATAT