Detailed information on CNT3060770


BLAST search results

BLAST vs Swiss-Prot:
sp|P49310|GRP1_SINAL, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374608Arabidopsis lyrataArabidopsis thaliana38.4433.9593.75128forward
CNT30615905Arabidopsis lyrataSesamum indicum24.028.148580forward
CNT30710437Arabidopsis lyrataGlycine max31.2323.5882.69104forward
CNT30508390Arabidopsis lyrataSolanum lycopersicum31.832.5882.08106forward
CNT30408881Arabidopsis lyrataPapaver somniferum29.139.583.5197forward
CNT30724703Arabidopsis lyrataLupinus angustifolius25.2326.1783.3384forward

Expression of CNT3060770

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SVATTATSVSTTTSAAVSTATTSTAASSAAASS*

>peptide 2 (53 aa)
MLRPSSSCPFIPSIASFMDFSSLKAVSRALSSVAQARPPTKHRYSTSADAIEI*

>peptide 3 (38 aa)
LRSYHRHLRIHHHLRCGIHRHHLHGRLLRRRFLVTEPR*

Sequence

>CNT3060770
CCTCCGTAGCTACCACCGCCACCTCCGTATCCACCACCACCTCCGCTGCGGTATCCACCGCCACCACCTCCACGGCCGCCTCCTCCGCCGCCGCTTCCTC
GTGACTGAGCCTCGTTAACAGTGATGCTACGTCCATCGAGCTCTTGTCCGTTCATTCCCTCAATCGCATCCTTCATGGATTTCTCATCCTTGAAGGCAGT
TTCAAGAGCTCTGTCATCAGTGGCCCAAGCTAGACCTCCAACGAAGCACCGATACTCAACATCTGCGGACGCCATTGAAATTTGAGAAGAAGATCTAGGG
TTTACAGTGAGAGAAGTGAGCAGAGAGATTTGT