Detailed information on CNT30607450


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198593Gossypium raimondiiPisum sativum7.2842.0283.33108reverse complement
CNT3047786Gossypium raimondiiPrunus dulcis7.7520.9592.17115reverse complement
CNT30157743Gossypium raimondiiPistacia vera19.259.7587.37285reverse complement
CNT30569398Gossypium raimondiiActinidia chinensis22.116.7985.37328forward
CNT30587644Gossypium raimondiiMusa acuminata10.4442.785.81155reverse complement
CNT30511569Gossypium raimondiiSolanum lycopersicum14.9690.2486.94222reverse complement
CNT30718598Gossypium raimondiiMalus domestica golden17.86102.3281.89265forward

Expression of CNT30607450

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTASLRHLLVLVHLRTLNWLVVKSLKTMEQRVTPDTYTEVRR*

>peptide 2 (42 aa)
GVGAAARGRRVVMASLDRRRRAVQGAHAALEAWHRLWGRSGS*

>peptide 3 (50 aa)
MNVQRQNPKKSLLPLHTSKQTVLIEKTLSHLLNRKWLGRGNVPFLRYSLE*

>peptide 4 (38 aa)
MGPVAQRIRARGYKLRCQGFESPFGHNQPKREGPFPLG*

>peptide 5 (39 aa)
MIEMVDPKLWNLGVGLLPKWGGLFFIIYRIFTFLFYIYI*

>peptide 6 (38 aa)
MELGRGSFAEMGWPFLYYLSYIYFSILYLYIVLPAKTK*

>peptide 7 (35 aa)
MLESFIICFCRYHHRLWMLGWYLMVEMTLKSKLGR*

Sequence

>CNT30607450
GGGGTAGGAGCGGCAGCTAGGGGCAGACGCGTGGTGATGGCGAGTCTCGACCGGCGGCGACGTGCAGTGCAGGGAGCGCATGCGGCGCTAGAGGCGTGGC
ATAGGCTTTGGGGTAGGAGCGGCAGCTAGGGGCAGGCATGTGGTGCCTAGGGTTTCTGCTGCTGAAAGTTTGTTAGCTGGTGTAATTTGGGCCAGTTGGG
TTAATGTGATTTGGGCTAGACTTTGGGTTTAATTGGGCTTGATATGGATTAATTTGTTTTTTGGGTTGTGTAATTAAGTTTGGGTATTGGGCCGGGCAGA
ATTTGGGCTTGTACAGATATGTTTCAGTGTACTGTTTTAGCCACAATGTAAGCAAGCAAAAGCAGTTGCTTGTTTGAGTTGGTTCTTCTATAATTAATGC
TTGAATCCTTCATTATTTGTTTTTGTAGGTATCATCATCGTCTTTGGATGTTGGGGTGGTACCTTATGGTGGAAATGACATTGAAGTCGAAGTTGGGGCG
GTAATATGTATAGATTCAATAAAAAATTCCGTTGATATTTTAATTTTTTTCTTCTAATCTAGTTTTTTTAAAAAATAAAGTGTTTTGGATTAATTATAGA
GACGTTTCTAAACTTTAATCAAAAGTCAGGAAAAAAAAGTGTCATGAATGTGCAACGTCAAAACCCCAAGAAATCCCTTCTCCCACTTCACACCTCGAAA
CAGACCGTTCTTATAGAAAAGACACTTTCACATCTTCTTAACCGAAAATGGTTGGGGAGAGGAAATGTTCCTTTTCTAAGGTACTCCTTGGAATAGATCT
AGTGGAGATGAGATGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACAAACTACGATGTCAGGGGTTTGAATCCCCCTTCGGCCACAACCAGCCCA
AAAGGGAAGGACCTTTCCCTCTTGGGTAGGAAAATCATGATCGAGATGGTGGACCCAAAGCTATGGAACTTGGGCGTGGGTCTTTTGCCGAAATGGGGTG
GCCTTTTCTTTATTATTTATCGTATATTTACTTTTCTATTTTATATTTATATATAGTATTACCGGCCAAAACAAAATAAAATAAGCATTTTTTTTGTTTT
ACACCCCGTAATCTTCCTCAGCCAAGCTTGAGCAAAATAGCAGAGCAAGTAGAAGTATTAGTAGCATAGAAAAAATGTGCTCCTCGTCATTAAATTAATG
TGTTTTCTCACGATAATTGTGGCCTCTCGAGAGAATTGATGACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCTGAGAACTCTTAATTGGCTGGT
TGTAAAAAGCCTCAAAACTATGGAACAAAGGGTTACCCCGGACACCTACACCGAGGTTAGACGGTGATTCTCAAATATCGCAGAACAGAATGTGATATGA
TGAGATAGAATGCAATGGAAACAAAGACACAGGGAAGAGGCTCGACAATCCATTAGTGAAAAACAAATTATTTTAAGAGGAGTG