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Detailed information on CNT3060744


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377890Arabidopsis lyrataArabidopsis thaliana85.8695.6687.81771forward

Expression of CNT3060744

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MESRLFLDVVVSKSSSVLKLLTGKDKPLLVRRNSFLVLDLGFDIINGV*

>peptide 2 (32 aa)
METEPNQVKNITSSPPKCMTQRTATFDQITKA*

>peptide 3 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRRTR*

>peptide 4 (30 aa)
MVLPVRVFTKICIPPLRRSTKWRVDSFWML*

Sequence

>CNT3060744
CTCACATCAAACTCGTCATATGTAAAGAGCAAAAATCAATGTTTAAAATGCACTTGGATTATTATTGAAAGTTGAAAGACAAAGGCCCGTTACGAGCCCA
ACCAAAAGTTCATAAGAACATACAAGAAAAGCAGACGATGAAACTTAAAACAACTAAAGGGACAAGTTTTTCCCGCAGATGGAAACAGAACCAAACCAGG
TGAAGAACATCACATCATCACCTCCCAAGTGCATGACACAGAGAACCGCCACTTTTGATCAGATCACAAAAGCTTAGAAGCTTCCACCACGAAGACGGAG
AACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT
GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAA
AGATCTGCATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCCTCAAGCTGCTTACC
GGCAAAGATAAGCCTCTGTTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACCTCGAGGGTA
ATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATACCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAA
GAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTGAATCTTTGCTTTGACGTTGTCA