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Detailed information on CNT30607325


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT004190, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Gossypium raimondiiSetaria viridis11.0128.7490.14142forward
CNT30639580Gossypium raimondiiNymphaea colorata14.541.1979.68187forward
CNT30529934Gossypium raimondiiEucalyptus grandis11.0134.0585.21142forward
CNT30517189Gossypium raimondiiJuglans regia11.0936.7687.41143forward
CNT30702258Gossypium raimondiiQuercus lobata22.0260.4385.56284forward
CNT30375086Gossypium raimondiiArabidopsis thaliana39.370.7183.83507forward
CNT30619260Gossypium raimondiiSesamum indicum40.3148.8384.04520forward
CNT3020603Gossypium raimondiiCitrullus lanatus46.5138.7687600forward
CNT3072357Gossypium raimondiiQuercus suber40.3150.6385.96520forward
CNT30380227Gossypium raimondiiManihot esculenta11.1634.5395.14144forward
CNT30402445Gossypium raimondiiBeta vulgaris21.6362.8482.44279forward
CNT30200315Gossypium raimondiiPisum sativum27.3668.4187.82353forward
CNT30505192Gossypium raimondiiNicotiana attenuata14.3432.7486.49185forward
CNT30709695Gossypium raimondiiGlycine max15.6660.4889.11202forward
CNT30543653Gossypium raimondiiBrassica napus26.1248.8481.6337forward
CNT3076654Gossypium raimondiiBrassica juncea23.0263.685.19297forward
CNT30261371Gossypium raimondiiBrassica rapa10.6232.7891.24137forward
CNT30612249Gossypium raimondiiArabis alpina15.5877.0184.08201forward
CNT30601056Gossypium raimondiiFraxinus excelsior19.6946.9581.5254forward
CNT30231757Gossypium raimondiiAnanas comosus9.9248.6784.38128forward
CNT30651401Gossypium raimondiiRosa chinensis12.3359.3384.28159forward
CNT30720770Gossypium raimondiiTriticum spelta11.4724.6783.78148forward
CNT30365203Gossypium raimondiiSorghum bicolor12.4874.8883.85161forward
CNT30355186Gossypium raimondiiLactuca sativa23.3340.982.72301forward
CNT30573685Gossypium raimondiiVitis vinifera12.3340.7784.28159forward
CNT30705212Gossypium raimondiiPrunus avium11.439.9589.12147forward
CNT3021984Gossypium raimondiiPopulus trichocarpa23.5714.2182.24304forward
CNT30329805Gossypium raimondiiDioscorea rotundata9.7721.4790.48126forward
CNT30103876Gossypium raimondiiOryza rufipogon11.2432.0191.03145forward
CNT30117878Gossypium raimondiiOryza nivara11.7133.5690.73151forward
CNT30723196Gossypium raimondiiLupinus angustifolius39.3863.7485.63508forward

Expression of CNT30607325

Peptides detected in this lncRNA

>peptide 1 (63 aa)
HFPITQTQKRTPKIKQKPNHHEISVKQETIKPSGCFFFLDKNSLTVPLSTCNEEACKDLQQAH*

>peptide 2 (72 aa)
MVIKTTIQSLKQSLLKIKYIRLYLRTHFQILTDIRILFPILRLYLYIHVRKYVIEAKFYIAINKYVHIEIIE*

>peptide 3 (73 aa)
MMMSLLPVVVTKISASETTSSRGTDGINLSNNDTSTGLLQGSSTTLSNITITTDNGDLAGNHHISSSHQTIGK*

>peptide 4 (35 aa)
MTKLGCPVAHPKFIRRPSANTMMPVLVSGKTHLSV*

>peptide 5 (59 aa)
MRRLVRTFNRHTNVISLIFSELSELSSELAEVKCSNFLVEVLWQYVNLLLIFSSCLLLP*

Sequence

>CNT30607325
GACACTTTCCCATCACCCAAACACAAAAAAGAACTCCAAAAATAAAACAAAAACCTAACCATCATGAAATTTCAGTAAAACAAGAAACAATCAAACCATC
CGGATGCTTTTTCTTTCTCGATAAAAACTCATTAACTGTCCCCCTCAGTACCTGTAATGAGGAGGCTTGTAAGGACCTTCAACAGGCACACTAATGTAAT
CAGCTTGATCTTTAGTGAGCTTAGTGAGCTTAGCTCCGAGCTTGCCGAGGTGAAGTGCAGCAACTTTCTCGTCGAGGTGCTTTGGCAATACGTAAACCTT
CTTCTCATATTTTCCAGTTGCCTTCTCCTTCCATAGCTCGAGCTGGGCAATCACCTGGTTAGTGAACGAGCAGGACATGACAAAACTTGGGTGTCCAGTG
GCACATCCCAAGTTCATCAGACGTCCTTCAGCCAACACAATGATGCCAGTTTTGGTTTCAGGGAAGACCCACCTATCGGTTTGAGGCTTAATGGTGATGC
GTTTAACACCAGGATAGTTCTCAAGACCGAGCATATCGATTTCATTGTCAAAGTGACCAATGTTGCAAACAATGGCATTGTTCTTCATCTTCCTCATGTG
ATCAACCATGATGATGTCCTTGTTACCAGTTGTGGTGACGAAGATATCAGCCTCGGAGACAACGTCTTCTAGGGGCACAGATGGGATCAATCTCAGTAAC
AATGACACGAGCACCGGCTTGCTTCAAGGCAGCAGCACAACCCTTTCCAACATCACCATAACCACAGACAACGGCGACCTTGCCGGCAATCATCACATCA
GTAGCTCTCATCAAACCATCGGGAAGTGAGTGACGGCATCCATACAAGTTATCGAACTGTTCCAAGAGATCAAATAATAAAAGCAAATTACATCAATATA
CACAAATGGTTATTAAAACCACAATTCAATCACTCAAGCAAAGCCTGTTAAAGATTAAATATATAAGACTATATCTCCGTACCCATTTTCAGATATTAAC
AGATATACGCATTTTATTTCCTATATTAAGACTATATCTCTATATCCATGTCAGAAAATATGTCATTGAAGCAAAATTTTACATTGCAATAAACAAGTAT
GTGCATATAGAGATCATAGAATAAGCTCCCAATTTCAGATCAATCAAAAGATAAGTAACAACTAGAACAGAAGAATCAAACACTAGATCTGAAGAAATTT
ACACAAAAACAAGAAACCCATTCATCAGATCTGCATATGAAAGAAGAGATCTATATCACAATATATAATAAAAAATAAAAAATAAAAAGC