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Detailed information on CNT30607179


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-96

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379273Gossypium raimondiiManihot esculenta73.7967.3684.65456forward
CNT3031691Gossypium raimondiiTheobroma cacao77.0266.287.39476forward

Expression of CNT30607179

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVLPVKVLTKICMPPRRRKTRWRVDSFWML*

>peptide 2 (56 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSSVMVLPVRVFTKICIFFKGKYGFVEMI*

Sequence

>CNT30607179
TCCAGAGGAGAAGTAAAAGTATTACAAAGGGGACAAGACCCAGAAATCCAAGTTAGAAAGACACACGAGCACTTTAAAACTTGAAACCAAGGCAAGATGG
TTGTGTTAGAATAATCAGTGGCCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCA
ATTGTTTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGAC
TTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCATGCCCCCACGAAGGCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTA
TAATCGGCAAGGGTCCGACCGTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGA
CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTTCTTCAAAGGGAAATATGGGTT
TGTAGAGATGATTTGAAT