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Detailed information on CNT30607170


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L926|CLPP_GOSHI, E-value = 7e-22

BLAST vs NONCODE:
NONCSAT000277, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268958Gossypium raimondiiChenopodium quinoa50.949.6687.5368forward
CNT30730474Gossypium raimondiiCorchorus capsularis43.1550.1685.58312forward
CNT30381505Gossypium raimondiiManihot esculenta10.7926.885.978forward
CNT30632291Gossypium raimondiiVigna unguiculata28.632283.09207forward
CNT30504293Gossypium raimondiiNicotiana attenuata65.1518.6588.96471forward
CNT3045660Gossypium raimondiiPrunus dulcis17.1529.5994.35124forward
CNT30588249Gossypium raimondiiMusa acuminata47.1673.6580.06341forward
CNT30143841Gossypium raimondiiMedicago truncatula29.326.6181.6212forward
CNT3060029Gossypium raimondiiArabidopsis lyrata51.8728.0986.93375forward
CNT3083483Gossypium raimondiiBrassica juncea28.2247.8987.25204forward
CNT30598582Gossypium raimondiiFraxinus excelsior21.9948.4894.34159forward
CNT30218200Gossypium raimondiiKalanchoe fedtschenkoi51.4533.0786.02372forward
CNT30655376Gossypium raimondiiRosa chinensis63.942.7888.74462forward
CNT30154187Gossypium raimondiiPrunus persica51.0444.8990.79369forward
CNT3057113Gossypium raimondiiAmborella trichopoda50.912.8186.41368forward

Expression of CNT30607170

Peptides detected in this lncRNA

>peptide 1 (49 aa)
KKISYRIQSAMLLLLTNSYFIWRRHSLLFSFHQIKKLIGAEREGMLEVW*

>peptide 2 (33 aa)
KKFHIEFKVPCYYYLLIHISYGEGIVFFFLSIK*

Sequence

>CNT30607170
AAAAAAATTTCATATCGAATTCAAAGTGCCATGCTATTATTACTTACTAATTCATATTTCATATGGCGAAGGCATAGTCTTCTTTTTTCTTTCCATCAAA
TAAAAAAACTCATTGGTGCCGAGCGTGAGGGAATGCTAGAGGTTTGGTAATTTCTCCTCCGGCCAGGAGAAAAGATCCCATTGAAGCAGGCAATCCCATG
CATATTGTATGCACATCTGGTTGCACAAATTGCATAATATCATAAATAGCTACCTCCAGGTATTACCCATCCGCTAGGAGAGTTTATAAACAAATACAGA
TCTTTGGTATCATTCTCTATACTGAGATATACCATAAGACCAACAAGTTGATTCGAGATCTCGATATCAACCTCTTGGCCTAAAAAAATAATTTTTCTCA
ATAAAGTCGGTTGATTAGGATAAAATTGTATCCCTTAGTAGCCGTACAGGCACCTTTTGATGCATACGGTTCAACAAAAATTGCGAAAAAAAATCACTGT
GTAGATTCCAGCCATCCTTCGTTTTTTCTAGTGTGCCTTTTCTAACTTCTAATTTCTAACGAAGGGGCTTTTTCTTACATTTTTAAAATAAAATGAAATT
CAAAATGAAATTAAAGAAAGATAAGTTTTGGCCCGTTTTCCTATAATCTATAATATAGAAAAAATTCGCTAAACTTATCGCACAAACTTTTCATTGATCT
ATTTTTTCATTGGGATTCAATCC