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Detailed information on CNT30606924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT000002, E-value = 1e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Gossypium raimondiiEucalyptus grandis22.8658.6292.51187forward
CNT30378684Gossypium raimondiiArabidopsis thaliana32.426.0894.72265forward
CNT3089382Gossypium raimondiiVigna radiata31.0555.790.16254forward
CNT30145113Gossypium raimondiiMedicago truncatula24.8261.8993.1203forward
CNT30441777Gossypium raimondiiAegilops tauschii37.0453.8287.79303forward
CNT3059907Gossypium raimondiiArabidopsis lyrata16.6326.7292.65136forward
CNT30263944Gossypium raimondiiBrassica rapa24.828.2990.64203forward
CNT3068455Gossypium raimondiiLeersia perrieri16.6341.9890.44136forward
CNT30655381Gossypium raimondiiRosa chinensis14.9122.894.26122forward
CNT30627899Gossypium raimondiiDaucus carota32.8921.293.68269forward
CNT3058322Gossypium raimondiiAmborella trichopoda40.3435.2287.27330forward
CNT30149760Gossypium raimondiiBrachypodium distachyon37.5371.2386.64307forward
CNT30117690Gossypium raimondiiOryza nivara25.5565.1189209forward
CNT3049694Gossypium raimondiiCucumis sativus13.5737.3795.5111forward

Expression of CNT30606924

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSFSFMHNFHTKVSTVNNISPGINYTTLTIKYRLVKIETVLVESHSANS*

Sequence

>CNT30606924
CTAGAGGGTAGTTATGAGCTTTTCGTTCATGCATAACTTTCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACT
ATCAAATACAGATTGGTTAAAATTGAAACCGTTTTGGTTGAAAGCCATAGTGCTAATAGCTAAAGCGATGGACCAGATACCTACTACAGGCCAAGCAGCT
AAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCAAGAGCAGCTACGATATATAAGTTTCTACTCT
TGACCGAATCTATAACCTTCATTAGCAGATTCATTTTCTATCCAGAAACAGGTTCACGAATACCATCAAGATCTACTGGAGGAGCAGCAATGAATGCGAC
AATAAATACAGAAGTTGAGGTTAACAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAG
CGACCCCATAGGATTTCGCTTTCGTGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTTATTTAATCATCAGGGACTCCCAAGCACACAAATTATC
TAAAACTAGATAATTGAAGGCTTGTTATTCAACAGAATAACATGACTTATATACCCGTGTGAACCAATATCAAATAGAAAATATACATCTAGGATCGTAT
CTAGATTTATCTCTTTTTTCTTAAGTTAGAAAAAGAAAATACGGATTTATATACATATGATATATATCCAAATCATCCCTATCTTCTATTAGGAATAGTG
TTTTGATATTATAATAAA