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Detailed information on CNT30606850


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 1e-96

BLAST vs NONCODE:
NONPOPT000627, E-value = 1e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524952Gossypium raimondiiPhaseolus vulgaris16.7622.6783.56146forward
CNT30644974Gossypium raimondiiCannabis sativa40.343.7181.77351forward

Expression of CNT30606850

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFFEIRLLDFRQWIRTYYNSSSTITEQRLAN*

>peptide 2 (32 aa)
MKHHGLNSEPWSETKQDTPLEPFTRGSKSIFL*

>peptide 3 (33 aa)
MNSTQALDMFPYSESTCLVARSFSGLRASFAST*

>peptide 4 (43 aa)
MPQLGSFQCSLKLGFSISGNGSAPTITAAAPSPNNAWPTKLSK*

Sequence

>CNT30606850
GTAGTGCAGCCTGGGCTAGCCAACATGAACATTAGAACCTTGTTTAAGCAGAGATACTATGAAGCACCACGGTCTCAACAGTGAGCCCTGGTCCGAAACC
AAACAGGACACCCCACTCGAGCCCTTCACCCGTGGTTCCAAGTCCATCTTCCTTTGATTTCTTCCTCATCTCATCCAATATGAACAGCACACAAGCACTT
GACATGTTCCCATATTCTGAAAGCACGTGCCTCGTGGCTCGGAGTTTTTCGGGTTTAAGGGCTAGCTTCGCCTCAACCTGATCCAATATGGCTGGACCAC
CGGGGTGAGCGATCCAAAAGAGCGAGTTCCAATCCGAAATGCCCAAAGGTTGAAATGCCTCAGCTAGGCTCTTTTCAATGTTCTTTGAAATTAGGCTTCT
CGATTTCAGGCAATGGATCCGCACCTACTATAACAGCAGCAGCACCATCACCGAACAACGCTTGGCCAACTAAACTATCCAAGTGAGTATCACTCGGCCC
ACGGAAAGTAACCGCGGTGATTTCCGAGCAAACAACAAGCACGCGAGCGCCCTTGTTGTTCTCGGCCAAGTCCTTGGCCACACGGAGCACAGTACCACCA
GCGAAACAACCTTGTTGATACATCATGAGACGCTTAACCGACGGGCGAAGGCCCAAAAGCTTAGTGAGCTGGTAATCGGCACCGGGCATGTCGACACCAC
TGGTGGTGCAAAACACGAGGTGGGTGATCTTGGATTTGGGCTGACCCCATTCCTTAATAGCCTTGGTGGCGGCTTCTTTGCCTAGCTTTGGTACCTCAAC
TACCACCATATCTTGTCTTGCATCAAGTGATGGTGCCATGTATTCACATACATTGGGGTTCTCTTTCAAAA