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Detailed information on CNT30606750


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 3e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196012Gossypium raimondiiPisum sativum36.9225.8482.73278forward
CNT3088050Gossypium raimondiiVigna radiata32.9349.481.05248forward
CNT30365392Gossypium raimondiiSorghum bicolor27.8936.2181.43210forward
CNT30355633Gossypium raimondiiLactuca sativa29.2240.2982.73220forward

Expression of CNT30606750

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MAPSLSGKIVWAAETSSNIGFSISGNGSAPTITAAAPSPNNAWPTKLSK*

>peptide 2 (53 aa)
SPSPVVPSPSSFDFFLISSNMNSTQALDMFPYSESTCLVARSFSGLRASFAST*

Sequence

>CNT30606750
AGCCCTTCACCCGTGGTTCCAAGTCCATCTTCCTTTGATTTCTTCCTCATCTCATCCAATATGAACAGCACACAAGCACTTGACATGTTCCCATATTCTG
AAAGCACGTGCCTCGTGGCTCGGAGTTTTTCGGGTTTAAGGGCTAGCTTCGCCTCAACCTGATCCAATATGGCTGGACCACCGGGGTGAGCGATCCAAAA
GAGCGAGTTCCAATCCGAAATGCCCAAAGGTTGAAATGCCTCAGCTAGGCTCTTTTCAATGTTCTTTGAAATTAGGCCGGGAACATCCTTGAGAAGGTGA
CCGTCAATGGCACCATCGCTGTCTGGCAAGATCGTTTGGGCCGCCGAGACGAGTTCAAACATAGGCTTCTCGATTTCAGGCAATGGATCCGCACCTACTA
TAACAGCAGCAGCACCATCACCGAACAACGCTTGGCCAACTAAACTATCCAAGTGAGTATCACTCGGCCCACGGAAAGTAACCGCGGTGATTTCCGAGCA
AACAACAAGCACGCGAGCGCCCTTGTTGTTCTCGGCCAAGTCCTTGGCCACACGGAGCACAGTACCACCAGCGAAACAACCTTGTTGATACATCATGAGA
CGCTTAACCGACGGGCGAAGGCCCAAAAGCTTAGTGAGCTGGTAATCGGCACCGGGCATGTCGACACCACTGGTGGTGCAAAACACGAGGTGGGTGATCT
TGGATTTGGGCTGACCCCATTCCTTAATAGCCTTGGTGGCGGCTTCTTTGCCT