Detailed information on CNT30606370


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517803Gossypium raimondiiJuglans regia48.3310.6585.15101forward
CNT30701953Gossypium raimondiiQuercus lobata54.0740.9490.27113forward
CNT30377298Gossypium raimondiiArabidopsis thaliana53.1144.5881.08111forward
CNT30282455Gossypium raimondiiChenopodium quinoa55.58.2987.07116forward
CNT3071730Gossypium raimondiiQuercus suber54.0727.8390.27113forward
CNT3047606Gossypium raimondiiPrunus dulcis35.898.638875forward
CNT3093690Gossypium raimondiiSolanum tuberosum53.112.7885.59111forward
CNT30123042Gossypium raimondiiPhyscomitrium patens28.2313.3588.1459forward
CNT30566785Gossypium raimondiiActinidia chinensis54.5542.8688.6114forward
CNT30311909Gossypium raimondiiCamelina sativa53.5923.6885.71112forward
CNT30625473Gossypium raimondiiDaucus carota56.4635.8790.68118forward
CNT30175658Gossypium raimondiiVigna angularis48.841.383.33102forward

Expression of CNT30606370

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CVADELTKKDLFVAVESVDDQAKKLIDLSLESKCLCIRH*

Sequence

>CNT30606370
GATGCGTTGCTGATGAGCTCACGAAGAAAGATCTCTTTGTTGCTGTAGAAAGTGTTGATGATCAAGCTAAGAAGCTGATTGATCTCAGCTTGGAAAGCAA
ATGTCTCTGTATCCGCCATTAATGAATAACCTCTAAACTCCCGATCTAAAATACGCTTAGCAAAATGAGAATCTCGAAAGCTTTCGAGGTTAGATTTTGA
AGAGAGAAG