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Detailed information on CNT30606094


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001388, E-value = 1e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675286Gossypium raimondiiSetaria viridis70.7960.8687.36269reverse complement
CNT30536068Gossypium raimondiiEucalyptus grandis100.5311.0992.93382forward
CNT30702077Gossypium raimondiiQuercus lobata38.9510.1582.43148forward
CNT30407349Gossypium raimondiiBeta vulgaris63.6899.1885.95242reverse complement
CNT30494125Gossypium raimondiiOlea europaea23.951.7484.6291reverse complement
CNT30157418Gossypium raimondiiPistacia vera30.2621.3885.22115forward
CNT30309694Gossypium raimondiiCamelina sativa65.5351.5591.16249forward
CNT30212263Gossypium raimondiiHelianthus annuus21.849.491.5783forward
CNT30367812Gossypium raimondiiSorghum bicolor49.7490.4391.53189reverse complement
CNT30147885Gossypium raimondiiBrachypodium distachyon72.3757.6589.82275forward
CNT30576653Gossypium raimondiiOryza barthii20.266.2490.9177forward

Expression of CNT30606094

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGLVHGFSFFLPHFAKGLKGDNASSCSQGPT*

>peptide 2 (50 aa)
MHQAVRKGQLDPLPQGSQMGEPRGATDSNYRTCTIHTRSNQPPILPLLRS*

Sequence

>CNT30606094
TTCTCCGACCCTTACTGCCCAACTTGAGAGCGGACAGCTAATGCATTCCACTTATTGAATAGGGTTCTATGGTCGGTCTGCGACCCCTGGACACCGAAGG
CGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGACGATGGGGTTGGTTCATGGATTTTCTTTCTTTTTGCCGCATTTCGCTAAAGGGTTGAAGGG
AGATAATGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGGGGGAACCTAGGGGAGCCACCGACTCCAACTACCGTAC
ATGTACGATCCATACTAGATCTAACCAGCCGCCCATCCTACCTCTTCTACGTTCTTGACAACCCATCTTTGTCTCAGTAG