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Detailed information on CNT30606039


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 6e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Gossypium raimondiiOryza sativa26.5828.981.75126forward
CNT30673835Gossypium raimondiiSetaria viridis16.8822.8687.580forward
CNT30521777Gossypium raimondiiSetaria italica26.5815.7983.33126forward
CNT30315797Gossypium raimondiiCorylus avellana21.3115.2887.13101forward
CNT30376827Gossypium raimondiiArabidopsis thaliana31.0162.2987.07147forward
CNT3069232Gossypium raimondiiQuercus suber23.8423.8483.19113forward
CNT30628401Gossypium raimondiiVigna unguiculata26.7937.883.46127forward
CNT30221211Gossypium raimondiiHordeum vulgare33.3313.7386.08158forward
CNT30591253Gossypium raimondiiMusa acuminata14.3521.7988.2468forward
CNT30133877Gossypium raimondiiLolium perenne26.5859.1584.13126forward
CNT30596421Gossypium raimondiiOryza meridionalis26.5817.9582.54126forward
CNT30329187Gossypium raimondiiDioscorea rotundata27.4333.5183.08130forward
CNT30148402Gossypium raimondiiBrachypodium distachyon26.5825.6684.13126forward

Expression of CNT30606039

Peptides detected in this lncRNA

>peptide 1 (70 aa)
PNQELTRLSKFLLATNKQPKPLLWQSNFRLSKNTFKQDYTRHELLSINISDAPLHHHITLNLPLPSWPKR*

>peptide 2 (31 aa)
MSLGIIVTRLAWIAQRLVSSKRPTRYASAAS*

>peptide 3 (35 aa)
MDRAKVGVFKETHKVCFCSFLKSKNGMALETQISLQ

Sequence

>CNT30606039
AGCCAAATCAAGAACTGACACGATTAAGCAAGTTTTTACTCGCAACAAATAAACAACCAAAGCCACTACTGTGGCAAAGCAACTTTCGATTAAGCAAAAA
CACATTTAAACAAGACTATACCAGACATGAGTTATTGTCCATTAACATATCAGACGCCCCACTTCATCATCACATCACATTGAACCTACCACTACCATCA
TGGCCTAAAAGATGATCAGAAAAAACAAAAAACCAATACATTTGCCTAAAAATAAACAATAGTTTCTTCTAAGCGACTGATCCACACTTTCGGAAATTAA
GCACGCTCTCCCCTGATCCTACGAGCCAACTGGATGTCCTTGGGCATAATTGTGACACGCTTGGCATGGATCGCGCAAAGGTTGGTGTCTTCAAAGAGAC
CCACAAGGTATGCTTCTGCAGCTTCCTGAAGAGCAAGAACGGCATGGCTCTGGAAACGCAAATCAGTCTGCAAA