« Back to Gossypium raimondii search


Detailed information on CNT30605939


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676109Gossypium raimondiiSetaria viridis10.8920.7691.6760forward
CNT30495125Gossypium raimondiiOlea europaea11.2520.8191.9462forward
CNT30125320Gossypium raimondiiPhyscomitrium patens24.8614.0883.21137forward
CNT30186142Gossypium raimondiiSecale cereale10.8923.539060forward
CNT30254935Gossypium raimondiiAvena sativa22.8718.6983.33126forward
CNT30447268Gossypium raimondiiSaccharum spontaneum27.2238.4686.67150forward
CNT30686633Gossypium raimondiiTriticum urartu10.8921.669060reverse complement
CNT30361473Gossypium raimondiiSorghum bicolor22.6923.2385.6125forward
CNT30596369Gossypium raimondiiOryza meridionalis10.8921.519060forward
CNT30154413Gossypium raimondiiPrunus persica25.4136.1885.71140forward
CNT30418220Gossypium raimondiiPapaver somniferum29.0437.2180.62160forward
CNT30114434Gossypium raimondiiEutrema salsugineum31.0342.9687.13171forward

Expression of CNT30605939

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLGIIVTRLAWIAQRLVSSKRPTRYASAAS*

>peptide 2 (58 aa)
MDRAKVGVFKKTHKVCFCSFLKSKNGMALETQISLQTNIISTIVNQKSIPSIAKELTQ*

>peptide 3 (47 aa)
WQSNFRLSKNTFKQDYTRHELLSINISDAPLHHHITLNLPLPSWPKR*

>peptide 4 (69 aa)
MLLQLPEEQERHGSGNANQSANKYHINDCQPEVNTINCQGIDTIIEILRTLKSWAISRTSLWKGNFLIRS

Sequence

>CNT30605939
GTGGCAAAGCAACTTTCGATTAAGCAAAAACACATTTAAACAAGACTATACCAGACATGAGTTATTGTCCATTAACATATCAGACGCCCCACTTCATCAT
CACATCACATTGAACCTACCACTACCATCATGGCCTAAAAGATGATCAGAAAAAACAAAAAACCAATACATTTGCCTAAAAATAAACAATAGTTTCTTCT
AAGCGACTGATCCACACTTTCGGAAATTAAGCACGCTCTCCCCTGATCCTACGAGCCAACTGGATGTCCTTGGGCATAATTGTGACACGCTTGGCATGGA
TCGCGCAAAGGTTGGTGTCTTCAAAAAGACCCACAAGGTATGCTTCTGCAGCTTCCTGAAGAGCAAGAACGGCATGGCTCTGGAAACGCAAATCAGTCTG
CAAACAAATATCATATCAACGATTGTCAACCAGAAGTCAATACCATCAATTGCCAAGGAATTGACACAATAATAGAGATACTCCGTACCTTGAAATCCTG
GGCAATTTCACGAACAAGCCTCTGGAAAGGCAATTTCCTGATAAGAAGCTC