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Detailed information on CNT30605685


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 6e-106

BLAST vs NONCODE:
NONGMAT000778, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Gossypium raimondiiSetaria viridis22.6426.9989.6173forward
CNT30532226Gossypium raimondiiEucalyptus grandis41.4943.8585.8317forward
CNT30316236Gossypium raimondiiCorylus avellana31.9453.1688.11244forward
CNT30547574Gossypium raimondiiIpomoea triloba25.5254.9386.67195forward
CNT30512729Gossypium raimondiiJuglans regia57.5942.7687.27440forward
CNT30371838Gossypium raimondiiArabidopsis thaliana47.6427.681.59364forward
CNT30276060Gossypium raimondiiChenopodium quinoa45.4254.7384.15347forward
CNT3019597Gossypium raimondiiCitrullus lanatus19.920.3284.87152forward
CNT30379936Gossypium raimondiiManihot esculenta32.3373.9587.04247forward
CNT30405823Gossypium raimondiiBeta vulgaris20.2934.4486.45155forward
CNT30488117Gossypium raimondiiOlea europaea24.6138.5285.64188forward
CNT30711584Gossypium raimondiiGlycine max46.075084.94352forward
CNT3045373Gossypium raimondiiPrunus dulcis41.8840.8285.62320forward
CNT30191304Gossypium raimondiiSecale cereale57.9834.0584.88443forward
CNT30300473Gossypium raimondiiTriticum aestivum57.9845.7684.65443forward
CNT30224354Gossypium raimondiiHordeum vulgare57.5984.7883.18440forward
CNT30395070Gossypium raimondiiTriticum turgidum57.9857.9182.62443forward
CNT30561658Gossypium raimondiiActinidia chinensis57.5937.6184.32440forward
CNT30510505Gossypium raimondiiSolanum lycopersicum55.138.7784.32421forward
CNT30552635Gossypium raimondiiOryza glaberrima44.6332.8587.39341forward
CNT30441158Gossypium raimondiiAegilops tauschii57.9858.3784.42443forward
CNT30313757Gossypium raimondiiCamelina sativa34.0329.6582.31260forward
CNT3059659Gossypium raimondiiArabidopsis lyrata28.6650.4681.28219forward
CNT30612508Gossypium raimondiiArabis alpina47.7714.3882.74365forward
CNT30135610Gossypium raimondiiLolium perenne32.3329.285.83247forward
CNT3014085Gossypium raimondiiZea mays40.7150.9885.21311forward
CNT30683923Gossypium raimondiiTriticum urartu57.9848.4283.52443forward
CNT30345702Gossypium raimondiiEragrostis tef34.5532.6781.06264forward
CNT30596122Gossypium raimondiiOryza meridionalis44.3748.9984.66339forward
CNT30369654Gossypium raimondiiOryza glumipatula44.6338.7587.1341forward
CNT30153558Gossypium raimondiiPrunus persica19.3743.7986.49148forward
CNT30107537Gossypium raimondiiOryza longistaminata43.4636.1386.75332forward
CNT30332479Gossypium raimondiiDioscorea rotundata13.0935.3482100forward
CNT30149525Gossypium raimondiiBrachypodium distachyon11.5229.1486.3688forward
CNT30100253Gossypium raimondiiOryza rufipogon44.6330.9487.39341forward
CNT30575129Gossypium raimondiiOryza barthii44.6341.8987.39341forward
CNT30497701Gossypium raimondiiDigitaria exilis37.788.6286.46288forward
CNT30116094Gossypium raimondiiOryza nivara44.6338.7587.39341forward
CNT30604019Gossypium raimondiiOryza punctata37.5784.9186.41287forward
CNT3051057Gossypium raimondiiCucumis sativus7.7225.7689.8359forward

Expression of CNT30605685

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLGPVVSGPKHQIFLARSLSQPNSSARILERTL

>peptide 2 (40 aa)
MPHNHSYSLLAYSLSSNSESGVICSFNPFLLRISATWAAA*

>peptide 3 (33 aa)
MGEKASMLTKYNQTENKTKLQQRLCHTITVTLS*

>peptide 4 (97 aa)
MGCCLRARSLHFLEYVSTLLVKNTVNTTKCLLRGLDLDQVNRFKKPWLGCELRSIENPPSCWNDLPTTSVDGISMEDHVTDFEADGSHVFFSQGPFL*

>peptide 5 (52 aa)
MICPPPLWMASAWRTTSQTSKQMALMFSSARAPSFDAHWNPATTESLISFRY*

Sequence

>CNT30605685
CGCACAAAAACCTCTAAATGAAGTTGGCATATGAAGATAAGAGATGTATAATGTCGATTGTAGTACATCATGATCATCATCAAAACACAAGCGTCTAAAA
ACGAAAGTACATCATATGGGTGAAAAAGCATCCATGCTAACAAAATATAACCAGACAGAAAACAAAACTAAATTGCAGCAAAGGTTATGCCACACAATCA
CAGTTACTCTCTCTTAGCTTACAGTTTGTCCTCGAACTCGGAAAGTGGGGTCATCTGTTCCTTCAATCCTTTCCTCTTGCGGATTTCGGCGACATGGGCT
GCTGCCTGAGAGCCAGGTCTTTGCATTTCCTCGAATACGTGTCCACGCTTCTGGTTAAGAACACTGTAAATACCACCAAGTGCCTGCTCCGGGGCTTGGA
TCTCGACCAAGTAAACAGGTTCAAGAAGCCTTGGCTTGGCTGTGAGCTGAGAAGCATAGAAAACCCTCCTAGCTGTTGGAATGATCTGCCCACCACCTCT
GTGGATGGCATCAGCATGGAGGACCACGTCACAGACTTCGAAGCAGATGGCTCTCATGTTTTCTTCAGCCAGGGCCCCTTCCTTTGATGCCCACTGGAAC
CCAGCAACAACTGAATCCTTAATTTCATTCAGATATTGAACTCCCTTACACATATCAACCACCATGTTAGGGCCAGTGGTCTCAGGGCCAAAACACCAAA
TCTTCTTAGCGAGATCTTTGTCCCAACCAAACTCCTCAGCCAGGATCTTGGAACGAACCTTAGG