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Detailed information on CNT3060563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639988Arabidopsis lyrataNymphaea colorata90.4657.9294.251982forward
CNT30531232Arabidopsis lyrataEucalyptus grandis100.5965.0794.12204reverse complement
CNT30550233Arabidopsis lyrataIpomoea triloba85.5866.5194.771875reverse complement
CNT30619309Arabidopsis lyrataSesamum indicum69.4269.2394.411521forward
CNT30283167Arabidopsis lyrataChenopodium quinoa100.3785.4695.362199reverse complement
CNT3021656Arabidopsis lyrataCitrullus lanatus100.5536.3995.872203reverse complement
CNT30632327Arabidopsis lyrataVigna unguiculata91.5162.595.812005reverse complement
CNT30195048Arabidopsis lyrataPisum sativum91.653.3695.622007reverse complement
CNT30507933Arabidopsis lyrataNicotiana attenuata88.5495.4395.311940reverse complement
CNT30711135Arabidopsis lyrataGlycine max70.5648.6695.341546reverse complement
CNT3047210Arabidopsis lyrataPrunus dulcis91.8362.5494.932012reverse complement
CNT30383013Arabidopsis lyrataTriticum turgidum90.0574.3492.751973reverse complement
CNT30542906Arabidopsis lyrataBrassica napus76.9599.2997.571686reverse complement
CNT30311297Arabidopsis lyrataCamelina sativa91.6599.797.162008reverse complement
CNT3083255Arabidopsis lyrataBrassica juncea99.0481.4397.832170forward
CNT30265711Arabidopsis lyrataBrassica rapa72.7162.1897.431593reverse complement
CNT30217525Arabidopsis lyrataKalanchoe fedtschenkoi79.4697.0590.921741reverse complement
CNT30434068Arabidopsis lyrataPapaver somniferum100.9683.5793.722212reverse complement
CNT30574469Arabidopsis lyrataVitis vinifera64.5477.1495.051414reverse complement
CNT3023562Arabidopsis lyrataPopulus trichocarpa100.4198.5795.272200forward
CNT3035495Arabidopsis lyrataCucumis melo98.4940.9795.512158reverse complement
CNT30583181Arabidopsis lyrataEchinochloa crusgalli84.0378.5493.71841reverse complement

Expression of CNT3060563

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSTTGRERHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQAVNRKDNSSRGPRRRLRTP*

>peptide 2 (85 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYL*

>peptide 3 (34 aa)
VDRGSKATLPLTIPRRVFKSSAKDSTRRSVVIIF*

>peptide 4 (38 aa)
MCRPSQTPHLTMSSARIDPPKRALGPKTGVVPRLRFTE*

>peptide 5 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 6 (31 aa)
QWIVAARPLCHLQYPVAYLSRLQRILPAARW*

Sequence

>CNT3060563
CAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGTAATTAT
ATTCTAGGCGGTCCGAACGACGCTTCCGCCGAACGGACTTAGCCAACGACACGTGCCTTTGGGAGCCGAAGCTCCTACTGAGGGTCGGCAATCGGGCGGC
GGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTCAACCAAGCGCGA
TGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGAATTACTATCGCGACGCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT
AAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC
AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAG
GCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTT
AGGACACCTGCGTTATCTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATCGACCCGCCGAAGCGAGCCTTGGGT
CCAAAAACAGGGGTTGTACCCCGCCTCCGATTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAAGCTCCCACTTATCCTA
CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC
GCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTA
CTCCCGCCGTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAAT
GCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCATTCTGAGCTGACTGTTCGACGCCCGGGGAAAGCTCCCGAGAGAGCCGTTCCCAGTCC
GTCCCCCGGCCGGCACGCAGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTTCGCCGACAGCCGACGGGTTCGGAACTGGGACCCCCGAGCCCAGC
CCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTG
ATGCGGTTATGAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACTTGCGGTGCTCT
TCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTAAACAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGG
ACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCTTAAGCGCTATCAGACGGGTTTCCCC
CGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCA
CCAAGATCTGCACCGACGGCCGCTCCGCCTGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGA
CGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCA
TGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCA