« Back to Gossypium raimondii search


Detailed information on CNT30605533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGRAT001218, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673277Gossypium raimondiiSetaria viridis5.4129.9686.7668reverse complement
CNT30211114Gossypium raimondiiHelianthus annuus4.9326.0588.7162forward

Expression of CNT30605533

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSQLSAILFHFLQLFLTNNLFVTYMFNFILIVSCMSLILNCYNF*

>peptide 2 (57 aa)
FPTETLTLQTGLLSRFLFLPPSLRHYNKNLKKKFNKKRLYSKRKKEEENGGTKDDSA*

>peptide 3 (35 aa)
MLDVIEEVQIARLEIRGLILTSFRSPSVLRGRLML*

Sequence

>CNT30605533
TTTTTCCCACTGAAACCCTAACTTTGCAAACAGGCCTTCTCTCTCGCTTTCTCTTCCTCCCTCCCTCCCTGCGACATTATAACAAAAATCTCAAAAAAAA
ATTTAACAAGAAGAGATTATATTCAAAAAGAAAAAAAGAAGAGGAAAATGGAGGCACCAAAGACGATTCAGCATAAAATGGAAGCAATAAGCTGATGATC
TGTTTGTGAGAGTCGGAAGAGGACCAGTTCACTTTTACGAAATATGCTTGATGTTATTGAGGAAGTACAGATAGCACGGTTAGAAATTAGGGGTCTGATT
CTTACTAGCTTCCGTTCTCCATCTGTTCTAAGGGGAAGACTGATGTTATGAAAAAGATTAAGTTTCCACAGATGGAGTAGAAATCTGCTAGTAAAACTGT
TCAACGACAAGCAAAGAGGCAGCACTACCTTGTCCCATAAGAGAAATTTTGGAAAAGGAAAAGAAGGTGGTGGATCTATTTCCTGATGCTACTCTATTGT
TGGTGGATCTGTAAATTGAAGTGGAAGTGCTGACTGTTCAATATATAGGTTCATAGTTCTCAACTTGTTGTTAAGTTTATGTGTGCATTGATGGTTAATG
ATAATTGTTAAAATGGATTTGAATTGCTTATTTTGATGATGAAATCATTAATTCTCAATGGCCAGAGGAAATGCCTCTGTGCCTGCCATGGAAATGACCA
AGTGGCTTGACACCAACTAGTAAGTTGCTATTTCTTGGCCTATTTTATCAGCTTTGCTATGCATACTGAGATTTTGGTACTAATACTAATTCCCAATTTT
CAATTGCAATCCATCTAAAATAGCCTTTTTATCTCCATTCGATATATAACGTTGTTGGCCTTTTCATTTTTAGGCATATTCAAAGTCTACAGTTTACATG
AGCCAGTTGAGTGCAATTCTTTTTCATTTTTTACAACTTTTTCTGACCAACAATTTATTTGTTACATATATGTTTAATTTTATTTTAATCGTTAGTTGTA
TGTCACTAATACTTAATTGTTATAATTTTTGACAACTAATGTTTTTTTTTAACAAATAGAATAGCATAAATGTTAATAATATAAATTTCTTATTCTTAAT
GCCATCCTGATATCTGTTCATTACCCAACCCAGTCTTCCTTGCCATTACCACTTCATTCCTTACATTTCTTATATTAAGTTTGATACATCAACCAAATTT
ATTTATTTTTAAAATATTAAATTTATATGTACGGGAGGGTTAGATTTGGACTCCAAC