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Detailed information on CNT30605497


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701196Gossypium raimondiiQuercus lobata90.7778.2784.3688forward
CNT3069547Gossypium raimondiiQuercus suber90.599.2883.24686forward
CNT3045767Gossypium raimondiiPrunus dulcis91.034784.64690forward
CNT3061706Gossypium raimondiiArabidopsis lyrata83.1168.7883.65630forward
CNT30153579Gossypium raimondiiPrunus persica91.0343.5683.19690forward
CNT3032610Gossypium raimondiiTheobroma cacao93.5487.6488.86709forward
CNT3025177Gossypium raimondiiPopulus trichocarpa90.570.1484.99686forward

Expression of CNT30605497

Peptides detected in this lncRNA

>peptide 1 (35 aa)
AKHHEIKRKQDNTKGRMVNRTQIRNHHGGEGQDAE*

>peptide 2 (30 aa)
MVFPVSVFTKICMPPLRRRTRWRVDSFWML*

Sequence

>CNT30605497
GGCTAAACATCATGAAATAAAAAGAAAACAAGACAACACCAAAGGCAGAATGGTTAACAGGACCCAAATCAGAAACCACCACGGAGGCGAAGGACAAGAT
GCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCC
CTCCTTGTCCTGAATCTTTGCTTTTACATTGTCAATCGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAATTTGC
ATACCACCACGAAGACGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTCCCAGCAAAAA
TTAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTTTT
TCCAGTGAGCGTTTTTACAAAGATCTGCATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGG
CCATCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGTTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGG
AGCTTTCCACCTCGAGGGTGATGGTCTTACCAGTAAGAGTTTTCACAAAGATCTGCAT