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Detailed information on CNT30605440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 3e-51

BLAST vs NONCODE:
NONMTRT000175, E-value = 2e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Gossypium raimondiiOryza sativa82.1526.5889.58336forward
CNT30378683Gossypium raimondiiArabidopsis thaliana81.6641.5993.11334forward
CNT3021444Gossypium raimondiiCitrullus lanatus31.7831.1890.77130reverse complement
CNT30196112Gossypium raimondiiPisum sativum84.674.7393.06346forward
CNT30489969Gossypium raimondiiOlea europaea27.875.8189.47114forward
CNT30300480Gossypium raimondiiTriticum aestivum81.9125.5791.04335forward
CNT30391503Gossypium raimondiiTriticum turgidum76.2862.492.31312forward
CNT30540528Gossypium raimondiiBrassica napus81.6627.8193.11334forward
CNT30555706Gossypium raimondiiOryza glaberrima52.5731.3989.77215forward
CNT30145435Gossypium raimondiiMedicago truncatula30.5634.5398.4125forward
CNT30598581Gossypium raimondiiFraxinus excelsior73.1184.788.29299forward
CNT3018289Gossypium raimondiiZea mays75.7911.9590.32310forward
CNT30627896Gossypium raimondiiDaucus carota100.2427.9586.34410forward
CNT30685372Gossypium raimondiiTriticum urartu81.9136.5391.64335forward
CNT30359652Gossypium raimondiiLactuca sativa86.0649.9389.2352forward
CNT3058320Gossypium raimondiiAmborella trichopoda89.7352.8190.19367forward
CNT30102095Gossypium raimondiiOryza rufipogon33.7458.9790.58138forward

Expression of CNT30605440

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TLLLEQESGYCSFIFKNSYTLKPKSYPFVDGASIAARSRGKL*

>peptide 2 (40 aa)
MSITFMHNFHTKVSTVNNISPGINYTTLTINYGLVKIETV*

>peptide 3 (36 aa)
NTLARTRKWLLLLYFQKLIYTKTKVLSICRWSFNSS*

Sequence

>CNT30605440
CAACACTCTTGCTAGAACAAGAAAGTGGTTATTGCTCCTTTATTTTCAAAAACTCATATACACTAAAACCAAAGTCTTATCCATTTGTAGATGGAGCTTC
AATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATTAGCCCAGGTATTAATT
ACACGACCTTGACTATCAACTACGGATTGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAACCAGATACCTACTA
CAGGCCAAGCAGCTAAGAAGAAATGTAAGAACGAAAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA
TAAGTTTCT