« Back to Arabidopsis lyrata search


Detailed information on CNT3060537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30309275Arabidopsis lyrataCamelina sativa8.8941.5297.8593forward
CNT3074694Arabidopsis lyrataBrassica juncea10.3323.0897.22108forward
CNT30612193Arabidopsis lyrataArabis alpina11.1926.1795.73117forward
CNT30477439Arabidopsis lyrataArabidopsis halleri26.4845.8689.53277forward
CNT30429165Arabidopsis lyrataPapaver somniferum8.0323.6694.0584forward
CNT30115231Arabidopsis lyrataEutrema salsugineum12.0534.1592.86126forward

Expression of CNT3060537

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MESSWSRSALIQSVVGFGLRPIVDWYDAVWISDSFP

>peptide 2 (34 aa)
MGFNGHKIRIDRPNICKSENECLGFCCRIKKQYE*

>peptide 3 (29 aa)
MLFKLITFYFIKLACTKQMECIWQIICYL*

Sequence

>CNT3060537
GTAAAATTCTGTAGTATTTCTGTATAAATAACATGCTATTTTTTCTAAATCCATAATTTCAAATAAAATAACATGCTGTTTAAGTTAATAACATTTTATT
TTATCAAACTCGCATGTACCAAACAAATGGAATGTATTTGGCAAATAATTTGTTATCTATAGTTACTAACCTAATACTGTAATTTTTTAAAAATTATGGT
TATTTACTCTCTTTAAAAATGTAAAAATGAATTATACTATACTCTTCTACTGATCCAAAAGTTAATTACCACAAAGCTTGGCCAATAGGCAATAAAGAGA
GGGAAAAGAACAAAAAATATACAGGTATTGGTTACAATTTAGAAGGCATCAGTATGGGCTTTAATGGGCATAAAATTAGAATCGACCGGCCCAATATTTG
CAAAAGTGAAAACGAGTGTCTAGGGTTTTGCTGTCGTATAAAGAAGCAATATGAGTGAATCTAACAAAATCTTTCTGAATTCGCGGCCGCTCATTTTCCT
GAAATTTGCATTAGAATCCGAGGAGTGAAGGGTTAATCTTCTGTGAATTCACCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGATTAAAGAGGAA
GAGACGAAAGATGAGACAGCGATCTAAGTAGAGTTTCGAACAAACCTGGTTTTGTGTTTTCTTTTGTTTTTAAATCAACTCTGTTCTGAGTTTCAGTTTG
AATGTATCGTTGGACCAAATTTTATGGAATTTATGTTTTATTACATTGAAAAAAATCAATTTTCTCATAAATGTTGATGTTCTACAATCTGCTTTATTAT
AATTTTGAGATGCTCTTAAGTTAGATCCTGGTGATTGTTTGGGGTGTTGATGATTGGGAATACAAAGGGAAGCAGTAGATTACTTAGTGGTCACACTTAG
TTATGGATGCTAGTAGTTGGCTCATTTGTTTCCCGGAATGGAGTCTAGTTGGTCCCGTTCGGCACTAATCCAGTCAGTAGTTGGCTTTGGTTTGCGTCCG
ATTGTGGATTGGTATGATGCTGTTTGGATATCTGATTCATTCCCCC