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Detailed information on CNT30605308


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L949|YCF2_GOSHI, E-value = 1e-56

BLAST vs NONCODE:
NONSLYT003666, E-value = 8e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201731Gossypium raimondiiPisum sativum10.8933.4584.8599forward

Expression of CNT30605308

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MILFYLNIELNYIKTYKIPNYILKQTDNT*

>peptide 2 (33 aa)
MNWLIRKKPCSLEDLSCAWYYMVPLCKNAESFS*

>peptide 3 (41 aa)
MIRLPRNGPAHREILIHWAFRYNQIESPKGAYPRSPNYVIE*

Sequence

>CNT30605308
AAGAAGCCCCTTTGACATCTCTTCATTTACAAATAAATCTCCGTGTGAAAACACAGAGACAAAGGGCTGATCTTTAAATAAGAAAAAGAGTGGATCTGCA
GGATCCCAAATGAATTGGCTTATTCGAAAAAAGCCTTGTTCTTTGGAGGATCTATCTTGTGCCTGGTACTACATGGTTCCACTCTGCAAGAACGCCGAAT
CATTCTCTTGAAGCTCATCCTTTTCATCATAAATGATCCGCTTGCCCCGAAATGGCCCGGCCCATAGGGAAATCCTAATTCATTGGGCCTTTCGATACAA
TCAAATAGAAAGCCCCAAGGGCGCATATCCTAGGAGCCCAAACTATGTGATTGAATAAATCCTCCTCTATCTGTTACGGGTCGAATACTCCTTCAAACTC
TAATTCGTATTTTTCATAGAGATTTCTCATCAACGATAGAACAAGATCCATTTTGCATAATATATAAGGGATTCCCCTCATCTTTGTTTGTTTTTTTTAT
TTTGTGAATTACTATAACAAGGCAAAACCCGAACAATCAACGCGACTAGTACGATTCGAACCTAGATCACACTTGGTGCAATAATCATTCTTAACTATTA
GGCCATCACATGGAGTTCAATTGATTCATCTTTTTGAATATTTTCTCGTATTACGTAAATATAAAGTTTGATTAAATTGGTATTTTAATTCCACAAACTA
GGAAATACAATACATGATGAATTAAAATATTCCTATGATTTTGTTTTATTTAAACATTGAACTCAACTACATCAAAACCTACAAAATTCCAAACTACATT
CTCAAACAAACAGATAATACATAAACGAGCGACCTTTCTTATGGGATAAAAAGATGCTATTGAGAAATGAATATTTTGTAAAGGTAGAATTAAAATACTC
AGTTTTAAG