« Back to Gossypium raimondii search


Detailed information on CNT30605266


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 1e-42

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640799Gossypium raimondiiNymphaea colorata28.2477.6686.46591forward
CNT30619000Gossypium raimondiiSesamum indicum38.1326.1297.74798forward
CNT30730372Gossypium raimondiiCorchorus capsularis55.7660.3195.21167forward
CNT30632345Gossypium raimondiiVigna unguiculata40.4231.8497.28846reverse complement
CNT30490117Gossypium raimondiiOlea europaea56.2896.4896.431178forward
CNT30712870Gossypium raimondiiGlycine max40.1850.697.5841forward
CNT3046714Gossypium raimondiiPrunus dulcis10.0398.5990.48210reverse complement
CNT30157615Gossypium raimondiiPistacia vera22.1763.2296.12464forward
CNT3092080Gossypium raimondiiSolanum tuberosum15.9657.2997.9334forward
CNT30181978Gossypium raimondiiSecale cereale22.8954.1996.45479reverse complement
CNT30299493Gossypium raimondiiTriticum aestivum22.8922.2496.24479forward
CNT30221603Gossypium raimondiiHordeum vulgare22.8439.6795.61478forward
CNT30592527Gossypium raimondiiMusa acuminata9.0356.5998.41189forward
CNT30543279Gossypium raimondiiBrassica napus23.1745.6798.35485forward
CNT30147386Gossypium raimondiiMedicago truncatula38.0351.6297.86796forward
CNT30435868Gossypium raimondiiAegilops tauschii22.8934.3696.45479forward
CNT30242955Gossypium raimondiiAvena sativa14.9133.4497.76312forward
CNT3082633Gossypium raimondiiBrassica juncea12.8581.7696.65269forward
CNT30207637Gossypium raimondiiHelianthus annuus39.2341.9797.08821forward
CNT30689135Gossypium raimondiiTriticum urartu22.8948.2996.03479reverse complement
CNT30595572Gossypium raimondiiOryza meridionalis1331.7495.96272forward
CNT30434643Gossypium raimondiiPapaver somniferum19.9256.0595.44417forward
CNT3057903Gossypium raimondiiAmborella trichopoda36.6932.0593.23768reverse complement
CNT30108930Gossypium raimondiiOryza longistaminata22.8920.4796.45479forward
CNT3038420Gossypium raimondiiCucumis melo41.9561.4894.99878forward
CNT30331546Gossypium raimondiiDioscorea rotundata12.4762.5993.49261reverse complement
CNT30113381Gossypium raimondiiFicus carica21.3110096.86446reverse complement

Expression of CNT30605266

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MIEVSLSFRKRWVGVGQAKKVTIIPDIQSAGDRSGGSHKVENFHPFAVSFDTAYSGLESNRKGSTLRN*

>peptide 2 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

>peptide 3 (33 aa)
MNDRGKLVFSEEVGGSGAGKESHNHTRYSERRR*

>peptide 4 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 5 (32 aa)
MMEKPASPLTFYLVKGAVNCNCEKVGRSGQRR*

Sequence

>CNT30605266
CTTTGATTCTGTCTTCCGGGTGAAGGTCCTGCGGAGGTCTTTTTTAGTGATCAAAATGGAATTGATTAGGGACAGTGACCCATGATGAAAGGAGCTATTG
ACCTGAGTGGTTTTCTATTTGTATTTGAAAAGCAAGGTAGGTAGGTTAGTTAACGAAAAGGTAAGGTGAGGCTGGAATGGGATATAGTAAGTGTGCCACG
AGTGCTCCCTTCTAAGGCTTCTGCTTCTCTCTAATAACGAAAAAATAACTCTTTCAGAAAGCAAAGCTACAACTCTTCAGTCTAAGCTATCTAAGCTAGA
ACTTAAGGCCGACCTCTTTCTTTTCCAGGGATACCCCACTTCCCGGTCTAGCTTCACTAACTGTATTCACAGTTTTCCAGATCTCGGAACCAGATCTACT
TTCTCATCGGCATTCTCTAAATGAATTACGTTATGGTCTTGAACTCTCGATATATCATATGTAATGAATGATCGAGGTAAGCTTGTCTTTTCGGAAGAGG
TGGGTGGGAGTGGGGCAGGCAAAGAAAGTCACAATCATACCCGATATTCAGAGCGCCGGAGATAGAAGCGGCGGCAGCCATAAAGTGGAGAATTTCCATC
CATTTGCTGTTTCCTTCGATACCGCTTACTCAGGATTAGAATCTAATAGAAAGGGGTCAACATTACGAAATTAGCCAGGTTCAGTTCTGACTATAGCTGC
AACCTATCTCATATTGGGGAGAAGTGTACCGCCCTCGATCAAACTAGAAATATCATAAGAGAAGAAAGATCGTAGCGTAGAAAAGAAAGAACGTTTTGAT
TCGCCTTTACGAGTTGAGTAAACAAAGAAACTTTCTCTGGTTATAACAGTCTAATGAGCGTTCACGTCAGGGCTTGTACTTAACTTAGTATAGATTGGGT
TGGTGTTCAGTGTACCGTGGGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGG
GGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTAAAACTTAGCGAACTGA
AACATCTGAATAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGGTTTGAAGAAAAACAAACACGAAGCTT
CGTTCCTCAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTTGACTTTCTATTT
AGTAAAGGGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCA
GTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTAC
CGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTTA
CTTGATATTAGTAAAGCGCACTTACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGC
TTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACC
GAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGT
AGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAG
ATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTT