Detailed information on CNT30605219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098127Gossypium raimondiiSolanum tuberosum2.9530.5292.38105reverse complement

Expression of CNT30605219

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MVRRSSINNIHCMYASQRSTGICSMLYPRVIWAVSVTPWTIILVGVKFLTFQPKAEHIRTGILFIEDPFSKNAPF*

>peptide 2 (34 aa)
MREERDHQCKWIDLSIDFEGDNMKHENRASHFSR*

>peptide 3 (43 aa)
MLPTRAFNPGKTSLTHTISSPPSRLAIPNVAFLTSVSYKDECK*

>peptide 4 (38 aa)
MKQAALCHPIFPGNQEQEQPIQAWSMKILLLIGRNRSQ*

>peptide 5 (38 aa)
MKIEPATFLVNNVTSNNEKIRSWMHACPYPPPIVLILA*

>peptide 6 (58 aa)
PGNRFLIFSGRIHLLVFAILCKQNSFLARLLLSQENSFSSRLTLLRTLLLEPEQGQAL*

>peptide 7 (51 aa)
MKMKSLPIPAMKSVEGTQPIRKHSPIPLQNMVEQKKPTQQQRQVVAYYVSS*

>peptide 8 (63 aa)
MRRLSYRLRWLSQGSISKVPQSMVDASLELYPIPYLTLFVRAAPLGCDAGRKKDFFLPLNNSQ*

>peptide 9 (61 aa)
MILLSRRAFPLLCSLILSLEMRLPSIDIYHRIWNPPMDEKVELQTPLAFARKHLESSAIYG*

>peptide 10 (47 aa)
MFLHRIRRYNMIEQQKLVQRLELYYLIFIESITDWRHQPMRRQPLIK*

>peptide 11 (50 aa)
MGRAFHCGNTFFKLKARKTNVIRALTLLPILVEFAASRLGFLFLFFYQRT*

>peptide 12 (49 aa)
MMTNLINWNDVQAYLKATNVTEATTRKLLDFIGQSSYFLLFLEASCVCS*

Sequence

>CNT30605219
GCCGGGAAATCGCTTTCTAATCTTCTCTGGGCGGATTCATCTTCTAGTTTTCGCTATTCTATGCAAACAAAACTCCTTCCTAGCTAGGCTTCTCCTTTCC
CAGGAGAACTCTTTCTCTTCTAGGTTGACTCTTCTCCGAACTCTTCTTTTAGAACCAGAACAAGGGCAAGCCCTCTAAGCTATTTTTTTTTTTTATATAT
AAGTAACAGCAATTGCTATTGAATCTCCGGCTATAGAATAAGCGGATTCTATAAAAAGTAATTCTTCTTCTTTGACGGCAGGAACACATTCTGACTTGAA
GTTGAAAGATGCAAAGTCAAGAATATCATAAGTCAAGCAGTTTCTAAAGAAAAGATCGATGCCAGCTCCGCTTCCTTCTCTAATTTTATGGGTAGGGCCT
TCCACTGCGGGAACACGTTCTTCAAATTGAAAGCAAGAAAGACCAATGTCATTCGCGCGCTTACTTTACTTCCCATTCTGGTCGAGTTCGCCGCTTCGAG
GCTAGGATTCCTCTTTCTTTTTTTCTATCAACGAACGTAAAAATATGTGATGTGGTATCTTACTTATCTTAGTCTTAGAGATTGGATCTTATTCAAATGA
AAATGAAAAGCCTACCCATCCCAGCTATGAAATCAGTAGAAGGAACACAGCCGATTCGGAAACATTCTCCGATTCCTCTACAGAATATGGTTGAGCAAAA
GAAACCGACTCAGCAACAAAGACAAGTGGTAGCATACTATGTTTCTTCATAGGATTAGGAGATATAATATGATCGAGCAACAAAAACTGGTTCAGCGGTT
AGAGTTATACTATCTTATTTTTATAGAATCGATTACTGATTGGAGACATCAACCGATGAGGAGACAACCTCTGATTAAGTGACCTCTTTATAGATCAACC
TTTCCCGGGAAAGAAGTTTTCTCCTCTAAAGCAGACTCCGCGGCGCCAAACTATTAGGATTAGAAGACAGAATCTGGTTCTGTGGGGGAAGGAAGACCTG
ACTTCAGGAGTGAAAGTGAAGTTCCTACAAAGGAAGATTCATTAGTTCTATTTAAGATTCTTATTCAAGATCCGTTATTATTATTATATTTATAAATAAA
AAAAAAAAAGCTTACCCTTGATTTCCAAAAGGGAAAAAGCCCTTCAAAGTAAAGAAAGAAAGGCTAGTGCCACGGACTCTTAAACGAAAGGAAAGGAATG
AGTTCCAGATCCATTTATGGCGTCCCGAGTTCCTTATTCTCTTTGCTCGGCTTCCTTTTCTATTGATCAGAAGCATCAAGCAGCGCCGGTTTAGAATTCG
ATTCTAAGAAAGGGCTCAGGCCCTCCCCCCTCCCTTTTTTTTATCCCCTTCCTGCTTTCAACTATTGAAAATTCTGTCTATTTCACCGCCATACCAAAAA
AAAAGTATCCTACTTTGCGTGATGGTCATATATGATGACCAATCTTATCAATTGGAACGATGTTCAGGCATACCTGAAAGCAACCAATGTCACTGAAGCT
ACTACTAGGAAGCTTCTTGACTTTATAGGACAGTCGTCATACTTCTTGCTTTTCTTGGAAGCGTCGTGCGTATGTTCCTAAGGCTGGTCTTGTCAATTCC
TAAGCTTTGCTTCCCCGTCCCCCCTAGGCTCAGTCCCCTTATGAAGAAAAATTAACCAGGATAGGCCTCTTCTTCATACCGAAGAAAAAGTCACTCGAAG
TAGTCAGCTTATTAGCAGTATAAGAGGAAGCCTAGCTAAATAAGTATGTAAGAAGCTTCCCTTTAACTTAAGGCTTGAGCTTGCCCTTTTCATAACATCA
GATTCGGCCTAGAACGCCTAGCGACTATTACTATAAATAAGAAAAGGCTAGGTGTCCATGCCACCAACCAACTCCTGAAAGAAAACAAGAGCTTCTCCGT
CCGGCAAACCACTAGAAGTACCCATCGAGTCGAGCAATGATCCAATGAAGCAAGCTGCTCTTTGTCACCCCATTTTCCCCGGGAACCAAGAGCAGGAGCA
GCCCATTCAGGCTTGGTCAATGAAAATTTTACTATTAATAGGCCGGAACCGTAGCCAATGAGTCTGCTCCACTCCTCTTTGTTCTGCACCACTTGGCTAT
AGCTATTTCCCCACCTAGGATCCCCAAAAAAATAGCATAATATATAATATAATAAAGTGAAAGATCAGATTGTTACAGAAGACCAGATCGAGGGAAGGTA
CCGGACAATCAAAGAAAGAAGCCAGCTTAAAAGCACCCTGGTCGAAGCGAAGCGCATGCGATGAGGGAAGAGAGAGACCACCAATGCAAGTGGATCGACT
TAAGCATCGATTTCGAAGGCGACAACATGAAGCATGAAAATAGAGCCAGCCACTTTTCTCGTTAATAATGTTACAAGCAACAACGAGAAAATACGCTCTT
GGATGCATGCATGCCCCTATCCCCCACCCATCGTCCTGATCTTGGCTTGAAGTATCCAACCCGATCTTGGCTTGGAGTATCCAAGTAGCGCTAAAACGAA
AAAGCGAACTATTGGAATTCTTGGGCTTAGCCTTTGAATTGCCCTGGATCAGTCCTATACTAGGTCACAATCAACCCATAACTTAAAATAAAAGAAAAAG
ATCGAAGTCGAGAAGCTCATCGCTCATGCTTCCAACCCGTGCTTTCAACCCCGGAAAGACTTCGCTGACACACACAATATCTTCGCCACCCTCCCGACTC
GCGATCCCCAATGTGGCTTTCCTCACTTCGGTAAGTTACAAGGATGAATGCAAATAGCAAGGCGCTATGCTGCGTGAAGTGAGACTGGCTGCCCTAAGTT
AAGTGCTTCCTTATTCATTAATGATCTTGCTCAGTAGGAGGGCTTTTCCCCTTCTGTGCAGCCTGATTCTATCTCTGGAAATGAGGTTGCCCTCGATTGA
CATTTATCATCGAATATGGAATCCTCCCATGGATGAGAAGGTTGAGTTACAGACTCCGTTGGCTTTCGCAAGGAAGCATCTCGAAAGTTCCGCAATCTAT
GGTTGATGCCTCACTCGAACTCTATCCCATTCCCTACTTGACTTTATTCGTCCGAGCGGCCCCTCTAGGATGCGATGCGGGAAGGAAGAAGGATTTCTTT
CTACCATTAAATAATTCGCAATAGTTAACCAAGCAGTAGCCAAGAACAAAGAAGCAAGCCAAGATCAATGGAGGGTCGCCCCAGTCAAAGATGGTAAGAA
GGAGTAGCATCAATAACATTCATTGTATGTACGCCTCTCAGCGATCCACAGGCATCTGTAGCATGTTGTACCCGAGGGTTATTTGGGCTGTGTCCGTTAC
ACCATGGACAATAATCTTAGTCGGAGTCAAATTCCTTACCTTTCAACCCAAAGCTGAACATATCCGCACAGGTATTCTATTTATTGAGGATCCATTTTCT
AAAAATGCCCCCTTTTGATTAGCCAGTTTCCAAGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTAGACACATAAAAAATTCTCGGCGTCGAGAAAGAT
TTGAGATTCCGTAAGTAACAAAGTGAGTGCTTTCTAAGGGAAAAAGAAAATGAAATACGAAC