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Detailed information on CNT30605213


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 2e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518633Gossypium raimondiiJuglans regia89.0762.8588.48269forward
CNT30276117Gossypium raimondiiChenopodium quinoa58.9424.1887.64178forward
CNT30728895Gossypium raimondiiCorchorus capsularis63.2526.3490.05191forward
CNT30164510Gossypium raimondiiPistacia vera89.0726.7188.85269forward
CNT30178164Gossypium raimondiiSecale cereale90.440.3888.28273forward
CNT30435385Gossypium raimondiiAegilops tauschii90.447.1588.64273forward
CNT30580001Gossypium raimondiiEchinochloa crusgalli90.437.488.64273forward

Expression of CNT30605213

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LVELEHCELDLLLLVLDLLGFGVEWIPSGCCSRLRCGRLRAASRRR*

>peptide 2 (45 aa)
MPSLSWILALTLSIVSEDSTSKVMVFPVRVLTKICILMWGGGSARV

Sequence

>CNT30605213
CCTTGTAGAACTGGAGCACTGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTCTTGGGTTTGGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGG
CTAAGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTC
GATTGTATCGGAGGACTCAACCTCTAAGGTTATGGTCTTCCCCGTCAGGGTTTTGACGAAGATCTGCATCTTGATGTGGGGCGGGGGGTCGGCTAGGGTT
TC