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Detailed information on CNT30605211


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 6e-44

BLAST vs NONCODE:
NONORUT002454, E-value = 2e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Gossypium raimondiiSetaria viridis17.0864.896.12232forward
CNT30641355Gossypium raimondiiNymphaea colorata18.1922.5896.76247forward
CNT30730558Gossypium raimondiiCorchorus capsularis58.3284.7193.06792forward
CNT30364089Gossypium raimondiiSorghum bicolor15.0244.9391.67204forward
CNT30335924Gossypium raimondiiCynara cardunculus13.1822.1394.97179forward
CNT30725732Gossypium raimondiiLupinus angustifolius20.9963.1997.19285forward

Expression of CNT30605211

Peptides detected in this lncRNA

>peptide 1 (38 aa)
RKSQSYPIFRAPEIEAAAAIKWRISIHLLFPSIPLTQD*

>peptide 2 (50 aa)
KKVTIIPDIQSAGDRSGGSHKVENFHPFAVSFDTAYSGLESNRKGSTLRN*

>peptide 3 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30605211
AAGAAAGTCACAATCATACCCGATATTCAGAGCGCCGGAGATAGAAGCGGCGGCAGCCATAAAGTGGAGAATTTCCATCCATTTGCTGTTTCCTTCGATA
CCGCTTACTCAGGATTAGAATCTAATAGAAAGGGGTCAACATTACGAAATTAGCCAGGTTCAGTTCTGACTATAGCTGCAACCTATCTCATATTGGGGAG
AAGTGTACCGCCCTCGATCAAACTAGAAATATCATAAGAGAAGAAAGATCGTAGCGTAGAAAAGAAAGAACGTTTTGATTCGCCTTTACGAGTTGAGTAA
ACAAAGAAACTTTCTCTGGTTATAACAGTCTAATGAGCGTTCACGTCAGGGCTTGTACTTAACTTAGTATAGATTGGGTTGGTGTTCAGTGTACCGTGGG
TACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCA
TGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTAAAACTTAGCGAACTGAAACATCTGAATAGCTAAAGGA
AGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGGTTTGAAGAAAAACAAACACGAAGCTTCGTTCCTCAGCAAAGTGTTCA
CTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTTGACTTTCTATTTAGTAAAGGGCGCAGTGAACTG
TAATTGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTTACTTGATA
TTAGTAAAGCGCACTTACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAG
AGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCA
CGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCAC
TCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGA
TCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTT