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Detailed information on CNT30605146


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Gossypium raimondiiSetaria viridis49.6466.4398.02758forward
CNT30524649Gossypium raimondiiSetaria italica62.1528.7997.79949reverse complement
CNT30702366Gossypium raimondiiQuercus lobata47.7473.1999.45729forward
CNT30283003Gossypium raimondiiChenopodium quinoa60.1296.1397.06918forward
CNT3020470Gossypium raimondiiCitrullus lanatus22.0762.5298.81337forward
CNT30632346Gossypium raimondiiVigna unguiculata72.9539.8398.831114reverse complement
CNT30221833Gossypium raimondiiHordeum vulgare43.2948.4296.82661reverse complement
CNT30569655Gossypium raimondiiActinidia chinensis101.1143.3696.051544reverse complement
CNT30147396Gossypium raimondiiMedicago truncatula72.9537.4598.651114reverse complement
CNT30438197Gossypium raimondiiAegilops tauschii49.7772.5998.03760reverse complement
CNT30245388Gossypium raimondiiAvena sativa21.3594.2298.77326forward
CNT30660235Gossypium raimondiiTriticum dicoccoides61.69100.1197.13942forward
CNT30216578Gossypium raimondiiKalanchoe fedtschenkoi83.3738.2296.781273reverse complement
CNT3067934Gossypium raimondiiLeersia perrieri14.7398.6893.78225forward
CNT30628241Gossypium raimondiiDaucus carota68.4338.799.041045forward
CNT30682011Gossypium raimondiiTriticum urartu49.7777.9598.03760reverse complement
CNT30429739Gossypium raimondiiPapaver somniferum68.0432.394.91039reverse complement
CNT30644906Gossypium raimondiiCannabis sativa13.626590.87208forward
CNT3056076Gossypium raimondiiAmborella trichopoda65.7543.6193.531004reverse complement
CNT3038324Gossypium raimondiiCucumis melo85.9269.5794.441312forward
CNT30557400Gossypium raimondiiPanicum hallii42.547.396.61649reverse complement

Expression of CNT30605146

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTTVATIKRLATTAGRYALLSRDPYSNQKTKGEH*

>peptide 2 (35 aa)
MFARWAECSPTSESSPLDNKKCPPRSPNYDESFAF*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

>peptide 4 (68 aa)
MCRFPNQKIGEHPFSRGYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPC*

Sequence

>CNT30605146
TGTCTCACGACGTTTTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACAT
CGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGG
GACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCT
TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGC
GGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACT
GCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAG
CGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTT
TCCATTCAAAGCTTATAACACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTT
TAATAAACAGTCGCTACCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCT
TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGA
AGTTTTTTCCTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAAAAGACTCGCGACTACGGCAGGGCGGTACGCTCTGCTCTCTCGCG
ACCCCTACTCTAATCAAAAGACTAAAGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGATGCTGAACGACACATTCGAAAACTAAAGCGCACACT
AAAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTA
GATAACAAAAAGTGTCCGCCCAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAA
GGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATG
GTTCTGTAGTCAAAGCAACTTCGTCAC