Detailed information on CNT30605120


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30229322Gossypium raimondiiAnanas comosus5.7236.0295.2985reverse complement
CNT30150933Gossypium raimondiiBrachypodium distachyon11.4363.9187.65170forward

Expression of CNT30605120

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MSMYGIRMYESNTLTAELSRSFIIIRNHKEKEKGPITSMDYKSNITSKQYQSNRPKGYDYDVGSCNIHLDKKLST*

>peptide 2 (75 aa)
MRIIKQMVSRATSGQKNVRLKRPTGQGLGLQPPTKFLRCGILKLACAPFRTLPGNLATQTYLLFLSYRIYGPAKP*

>peptide 3 (50 aa)
MNHPHPLFWISLIEFCLIIYRIIKTHFSKISSLSSGSNINCNDSINGSLG*

>peptide 4 (70 aa)
YNVSFVVSRMEPSSSPDMRYKYPYLVGHRWDRRAPRKVWWRYTSFLSSTRLLVLRAVPFPPPFQLEFFSI*

>peptide 5 (45 aa)
ITYHLLYPVWSHLLRPTCATSIPTWSATGGTDARPGKCGGATPVS*

>peptide 6 (49 aa)
MWNSKAGVCAVPHPTRKLGHSDLSLVLELQDLWPRKTIIPYFNLYRDSA*

>peptide 7 (34 aa)
MAPQNHNPLLQSLSRFRVIWVMGTTAFSRHLHIL*

Sequence

>CNT30605120
CTATAACGTATCATTTGTTGTATCCCGTATGGAGCCATCTTCTTCGCCCGACATGCGCTACAAGTATCCCTACTTGGTCGGCCACCGGTGGGACCGACGC
GCGCCCAGGAAAGTGTGGTGGCGCTACACCAGTTTCCTGAGCAGTACCCGCCTTCTCGTACTGAGAGCTGTTCCCTTTCCTCCTCCATTTCAGCTGGAGT
TTTTTTCTATCTGATTTAAGGAATCCGGAACCGATCTCAAAGCTTTTTTCAAGAGCGTCATGTCCCACTCAGAATATCTTGAAGTGCCTAGAATCCCGCT
CGCTCCGTTGGCGGCAATTCCCTATAGTTGTAAACTATAGAACGTCAATTCTTTCTTCAGCTGCAACACTTTTTTGCCATCCCACCTGATGAGAATTATC
AAACAGATGGTTAGCAGAGCCACTTCCGGTCAAAAGAATGTTAGGCTGAAGAGACCTACTGGACAAGGATTGGGGTTACAGCCTCCAACCAAATTCCTGC
GATGTGGAATTCTAAAGCTGGCGTGTGCGCCGTTCCGCACCCTACCCGGAAACTTGGCCACTCAGACTTATCTCTTGTTCTTGAGCTACAGGATTTATGG
CCCCGCAAAACCATAATCCCCTACTTCAATCTCTATCGAGATTCCGCGTAATCTGGGTCATGGGGACCACTGCCTTCTCGCGTCATCTACATATCCTATA
ATAGTCTAGTAGTGAGGAGAAGATATCGCACCTACATCTCCTATAATAGTTGTCACAAGAAGATCTCGTTAAACAACTTATAATGCCAACTTCCGTAAGG
TGTTTAAGTGGTTCTCATGTAGCCTTTGATTCACGTAAGTAGATTGATCCGCCACGGACGGTTAACCCCGTGAGCGTTCTCTTAAGCTCTGAACTACAAG
TAAGAATGCCAGAGGTTTCAGACTTAACTCTTGATACTCCGCTCTGAGATCACACTAACAGTGATTTCGGGGAGGAAATAATAAAGAAAAATTTATACAA
AGCTAGATATGAATCATCCACACCCTCTTTTTTGGATTTCATTAATTGAATTTTGTTTGATTATTTATCGGATCATAAAAACCCACTTTTCGAAGATCTC
TTCCCTCTCTTCGGGATCGAACATCAATTGCAACGATTCGATAAACGGCTCATTGGGATAGATGTAGTTAAATAATACCCCCCTAGAAACGTATAAGAAG
TTTTCTCCTCGTACGGCTCGAGAAAAAAATGATTAATTAAAAGTTATGTCTATGTATGGAATTAGAATGTATGAAAGCAATACTCTAACCGCTGAGTTAA
GTAGGTCATTTATTATCATAAGGAATCATAAAGAGAAAGAAAAGGGACCTATTACATCGATGGATTATAAATCCAATATTACTTCTAAGCAATACCAATC
AAACAGACCAAAAGGGTATGATTATGATGTTGGATCATGTAATATTCATCTTGACAAGAAATTATCTACATAATATGATAAAATATG