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Detailed information on CNT30605073


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670689Gossypium raimondiiSetaria viridis47.9668.0798.35729forward
CNT30378673Gossypium raimondiiArabidopsis thaliana46.9757.2698.32714forward
CNT30162096Gossypium raimondiiPistacia vera8.2242.0999.2125forward
CNT3089926Gossypium raimondiiSolanum tuberosum23.0315.8296.57350forward
CNT30219690Gossypium raimondiiHordeum vulgare42.594.3194.74646forward
CNT30543266Gossypium raimondiiBrassica napus44.5424.9498.38677reverse complement
CNT30508923Gossypium raimondiiSolanum lycopersicum19.890.12100301reverse complement
CNT30554477Gossypium raimondiiOryza glaberrima47.599.8697.23722forward
CNT30670388Gossypium raimondiiTriticum dicoccoides50.7227.596.24771reverse complement
CNT3067980Gossypium raimondiiLeersia perrieri10.5953.4996.89161forward
CNT30715685Gossypium raimondiiMalus domestica golden29.4736.8186.16448forward
CNT30688989Gossypium raimondiiTriticum urartu50.7239.296.5771reverse complement
CNT30362056Gossypium raimondiiSorghum bicolor6.5824.2798100forward
CNT30595568Gossypium raimondiiOryza meridionalis19.0174.4893.08289forward
CNT30357719Gossypium raimondiiLactuca sativa84.3468.7498.281282forward
CNT30484250Gossypium raimondiiChara braunii12.4326.0394.71189forward
CNT30571801Gossypium raimondiiVitis vinifera65.3376.0999.3993forward
CNT30106724Gossypium raimondiiOryza longistaminata13.4923.0685.85205reverse complement
CNT30320583Gossypium raimondiiAsparagus officinalis17.5724.3498.88267reverse complement
CNT30118993Gossypium raimondiiCitrus clementina17.9677.5695.24273reverse complement
CNT3038287Gossypium raimondiiCucumis melo68.5569.5197.61042forward
CNT30331625Gossypium raimondiiDioscorea rotundata15.3973.5894.44234reverse complement
CNT30151167Gossypium raimondiiBrachypodium distachyon7.8320.3897.48119forward
CNT3099709Gossypium raimondiiOryza rufipogon24.4117.0498.11371reverse complement
CNT3039925Gossypium raimondiiMarchantia polymorpha21.5165.9395.72327reverse complement

Expression of CNT30605073

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFARWAECSPTSESSPLDNKKCPPRSPNYDESFAF*

>peptide 2 (34 aa)
MTTVATIKRLATTAGRYALLSRDPYSNQKTKGPY*

>peptide 3 (68 aa)
MCRFPNQKIGEHPFSRGYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPC*

>peptide 4 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

Sequence

>CNT30605073
CGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTTTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAAC
CCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCC
CGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTC
AGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCTTAGACGAAAGAGT
GGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTC
TTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGG
TCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGCTTATAACACTTCTCCTT
TTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCTGGTATGTG
CCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTA
TACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
GACTATGACAACAGTCGCGACTATAAAAAGACTCGCGACTACGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGC
CCCTACTGAAGATTCAAAAGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGATGCTGAACGACACATTCGAAAACTAAAGCGCACACTAAAAAGT
GCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACA
AAAAGTGTCCGCCCAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTG
ATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGT
AGTCAAAGCAACTTCGTCAC