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Detailed information on CNT30605068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641383Gossypium raimondiiNymphaea colorata74.836.5993.611143reverse complement
CNT30550219Gossypium raimondiiIpomoea triloba74.826.3298.691143reverse complement
CNT30505560Gossypium raimondiiNicotiana attenuata74.851.798.431143forward
CNT30185187Gossypium raimondiiSecale cereale75.7932.7496.81158reverse complement
CNT30299053Gossypium raimondiiTriticum aestivum75.7932.3296.631158reverse complement
CNT30401406Gossypium raimondiiTriticum turgidum75.7939.5696.981158reverse complement
CNT30140161Gossypium raimondiiLolium perenne75.7934.0297.061158reverse complement
CNT3017954Gossypium raimondiiZea mays76.1830.7296.311164reverse complement
CNT30655407Gossypium raimondiiRosa chinensis74.2133.9298.851134reverse complement
CNT30721631Gossypium raimondiiTriticum spelta75.7933.3496.721158reverse complement
CNT30346087Gossypium raimondiiEragrostis tef53.9379.6996.6824reverse complement
CNT30359520Gossypium raimondiiLactuca sativa87.552.5196.931337forward
CNT30571858Gossypium raimondiiVitis vinifera84.6937.3397.221294forward
CNT30499372Gossypium raimondiiDigitaria exilis75.7934.0797.061158reverse complement
CNT30603680Gossypium raimondiiOryza punctata75.7929.3496.981158reverse complement

Expression of CNT30605068

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFARWAECSPTSESSPLDNKKCPPRSPNYDESFAF*

>peptide 2 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

>peptide 3 (34 aa)
MTTVATIKRLATTAGRYALLSRDPYSNQKTKGPY*

>peptide 4 (68 aa)
MCRFPNQKIGEHPFSRGYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPC*

Sequence

>CNT30605068
TGTCTCACGACGTTTTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACAT
CGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGG
GACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCT
TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGC
GGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACT
GCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAG
CGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTT
TCCATTCAAAGCTTATAACACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTT
TAATAAACAGTCGCTACCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCT
TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGA
AGTTTTTTCCTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAAAAGACTCGCGACTACGGCAGGGCGGTACGCTCTGCTCTCTCGCG
ACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGAAGATTCAAAAGGCTTGTAGACTCGTGATGCTGAACGACACATTCGAAAACTAAAGCGCACAC
TAAAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTT
AGATAACAAAAAGTGTCCGCCCAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAA
AGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCAT
GGTTCTGTAGTCAAAGCAACTTCGTCAC