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Detailed information on CNT30605054


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SP22|CALR_MAIZE, E-value = 6e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517641Gossypium raimondiiJuglans regia59.0862.2785.07335forward
CNT30377354Gossypium raimondiiArabidopsis thaliana68.7858.3880.51390forward
CNT30278532Gossypium raimondiiChenopodium quinoa73.3737.8584.13416forward
CNT30728459Gossypium raimondiiCorchorus capsularis44.2740.4890.04251forward
CNT30629341Gossypium raimondiiVigna unguiculata73.3738.182.93416forward
CNT30709122Gossypium raimondiiGlycine max23.4637.7888.72133forward
CNT3043981Gossypium raimondiiPrunus dulcis36.8659.3882.78209forward
CNT30164689Gossypium raimondiiPistacia vera34.2235.2790.21194forward
CNT30189101Gossypium raimondiiSecale cereale43.3923.4182.52246forward
CNT30397803Gossypium raimondiiTriticum turgidum43.2131.2182.45245forward
CNT30561418Gossypium raimondiiActinidia chinensis59.6133.5386.39338forward
CNT30238817Gossypium raimondiiBrassica oleracea23.9925.5280.88136forward
CNT30144977Gossypium raimondiiMedicago truncatula51.6831.8187.71293forward
CNT30264134Gossypium raimondiiBrassica rapa53.9735.2979.08306forward
CNT30140632Gossypium raimondiiLolium perenne25.9372.0685.03147forward
CNT30126269Gossypium raimondiiCorymbia citriodora48.3272.381.75274forward
CNT30686469Gossypium raimondiiTriticum urartu20.9921.0686.55119forward
CNT30349705Gossypium raimondiiEragrostis tef35.9829.180.88204forward
CNT30366134Gossypium raimondiiSorghum bicolor22.420.1388.19127forward
CNT30120413Gossypium raimondiiCitrus clementina68.6148.0885.86389forward
CNT3038556Gossypium raimondiiCucumis melo60.6743.5481.4344forward
CNT30149228Gossypium raimondiiBrachypodium distachyon60.4972.2179.88343forward
CNT30585446Gossypium raimondiiEchinochloa crusgalli20.9939.481.51119forward
CNT30116414Gossypium raimondiiOryza nivara18.5237.583.81105forward
CNT30333676Gossypium raimondiiCynara cardunculus43.3947.6780.49246forward
CNT30725707Gossypium raimondiiLupinus angustifolius62.2664.0785.55353forward

Expression of CNT30605054

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MWSPYMTQQPCHFWQSKYCQTICHLALSKSQYQQQQ*

>peptide 2 (60 aa)
AFCFSFSTSNLGFHVVSLYDSATLSFLAIKILSNNMPSCIVQISIPTAAIGSKSGLSSSK*

Sequence

>CNT30605054
GCCTTCTGTTTTTCTTTCTCAACCTCAAACTTAGGCTTCCATGTGGTCTCCCTATATGACTCAGCAACCTTGTCATTTTTGGCAATCAAAATATTGTCAA
ACAATATGCCATCTTGCATTGTCCAAATCTCAATACCAACAGCAGCAATAGGCTCAAAGTCAGGCTTATCAAGCTCAAAGTAGTCGGGGTTTGGAATCTC
TTGAGGCTTCCAAATACCCTTGTAATTGGGGTTATCAATTAGTGGAGCAGACCATTTTCCCTTGTAAGCTGGATTCATCTTCATTGGCCTCTTCCATTCA
CCACAACCAGGGGCTGTCTCACACTTCGGGTTATCAATTTTGGGGGCTTCCCACTCACCGTCCTCTTCATCATCCCAATCTTCTGGCTTGGTTGCCTCAG
GATCATCTATCTCCTCAGGCTCATTGAGCTCATTCACTATCGCATACTTCCGTGCCTTCTCGCTCACAAGAAGCCCGTAGTCATCATGTCCTTCGCTCTT
TGAATGTTTCCATACACCTGCAACCCCCCAAACCCCATCAATATATACCTTTCAACTCCCTAAAACA